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LRRC7 leucine rich repeat containing 7 [ Vicugna pacos (alpaca) ]

Gene ID: 102527394, updated on 10-Mar-2024

Summary

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Gene symbol
LRRC7
Gene description
leucine rich repeat containing 7
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See LRRC7 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
27
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 13 Unlocalized Scaffold NW_021964180.1 (3101411..3432997)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882753.1 (3123234..3618581, complement)

NW_021964180.1Genomic Context describing neighboring genes Neighboring gene ferritin light chain pseudogene Neighboring gene uncharacterized LOC116282811 Neighboring gene leucine rich repeat containing 40 Neighboring gene serine and arginine rich splicing factor 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neurotransmitter receptor transport postsynaptic membrane to endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurotransmitter receptor transport, endosome to postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964180.1 Reference VicPac3.1 Primary Assembly

    Range
    3101411..3432997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031683476.1 → XP_031539336.1  leucine-rich repeat-containing protein 7 isoform X2

    UniProtKB/TrEMBL
    A0A6J3B3P8
    Conserved Domains (4) summary
    COG4886
    Location:129 → 439
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00992
    Location:1484 → 1569
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:63 → 84
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:84 → 139
    LRR_8; Leucine rich repeat

  2. XM_031683477.1 → XP_031539337.1  leucine-rich repeat-containing protein 7 isoform X3

    UniProtKB/TrEMBL
    A0A6J3B1N2
    Conserved Domains (4) summary
    COG4886
    Location:129 → 439
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00992
    Location:1437 → 1522
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:63 → 84
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:84 → 139
    LRR_8; Leucine rich repeat

  3. XM_031683475.1 → XP_031539335.1  leucine-rich repeat-containing protein 7 isoform X1

    UniProtKB/TrEMBL
    A0A6J3AXJ7
    Conserved Domains (2) summary
    COG4886
    Location:61 → 216
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:63 → 84
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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