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L1CAM L1 cell adhesion molecule [ Vicugna pacos (alpaca) ]

Gene ID: 102524770, updated on 10-Mar-2024

Summary

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Gene symbol
L1CAM
Gene description
L1 cell adhesion molecule
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
29
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) X Unlocalized Scaffold NW_021964237.1 (538998..562603, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005883068.1 (277556..292513)

NW_021964237.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene arginine vasopressin receptor 2 Neighboring gene Rho GTPase activating protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule L1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964237.1 Reference VicPac3.1 Primary Assembly

    Range
    538998..562603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006218506.3 → XP_006218568.1  neural cell adhesion molecule L1 isoform X1

    UniProtKB/TrEMBL
    A0A6I9IQL2
    Conserved Domains (9) summary
    cd05845
    Location:134 → 228
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    cd05867
    Location:347 → 422
    Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    cd05876
    Location:260 → 330
    Ig3_L1-CAM; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    smart00409
    Location:524 → 608
    IG; Immunoglobulin
    smart00410
    Location:434 → 514
    IG_like; Immunoglobulin like
    cd00063
    Location:612 → 709
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:815 → 905
    fn3; Fibronectin type III domain
    pfam13882
    Location:1144 → 1229
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:53 → 130
    Ig; Immunoglobulin domain

  2. XM_015251381.2 → XP_015106867.1  neural cell adhesion molecule L1 isoform X3

    UniProtKB/TrEMBL
    A0A6J0B2U4
    Conserved Domains (9) summary
    cd05845
    Location:129 → 223
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    cd05867
    Location:342 → 417
    Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    cd05876
    Location:255 → 325
    Ig3_L1-CAM; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    smart00409
    Location:519 → 603
    IG; Immunoglobulin
    smart00410
    Location:429 → 509
    IG_like; Immunoglobulin like
    cd00063
    Location:607 → 704
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:810 → 900
    fn3; Fibronectin type III domain
    pfam13882
    Location:1139 → 1224
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:48 → 125
    Ig; Immunoglobulin domain

  3. XM_006218507.3 → XP_006218569.1  neural cell adhesion molecule L1 isoform X2

    UniProtKB/TrEMBL
    A0A6I9ITM6
    Conserved Domains (9) summary
    cd05845
    Location:134 → 228
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    cd05867
    Location:347 → 422
    Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    cd05876
    Location:260 → 330
    Ig3_L1-CAM; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    smart00409
    Location:524 → 608
    IG; Immunoglobulin
    smart00410
    Location:434 → 514
    IG_like; Immunoglobulin like
    cd00063
    Location:612 → 709
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:815 → 905
    fn3; Fibronectin type III domain
    pfam13882
    Location:1144 → 1225
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:53 → 130
    Ig; Immunoglobulin domain

  4. XM_006218508.3 → XP_006218570.1  neural cell adhesion molecule L1 isoform X4

    UniProtKB/TrEMBL
    A0A6I9IR00
    Conserved Domains (9) summary
    cd05845
    Location:129 → 223
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    cd05867
    Location:342 → 417
    Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    cd05876
    Location:255 → 325
    Ig3_L1-CAM; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    smart00409
    Location:519 → 603
    IG; Immunoglobulin
    smart00410
    Location:429 → 509
    IG_like; Immunoglobulin like
    cd00063
    Location:607 → 704
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:810 → 900
    fn3; Fibronectin type III domain
    pfam13882
    Location:1139 → 1220
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:48 → 125
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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