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NPHP3 nephrocystin 3 [ Camelus ferus (Wild Bactrian camel) ]

Gene ID: 102518011, updated on 10-Mar-2024

Summary

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Gene symbol
NPHP3
Gene description
nephrocystin 3
See related
EnsemblRapid:ENSCFEG00005003771
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus ferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
27
Annotation release Status Assembly Chr Location
102 current BCGSAC_Cfer_1.0 (GCF_009834535.1) 1 NC_045696.1 (110454971..110487449)
101 previous assembly CB1 (GCF_000311805.1) Unplaced Scaffold NW_006213830.1 (402924..432329)

Chromosome 1 - NC_045696.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC116666312 Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene ubiquitin like modifier activating enzyme 5 Neighboring gene acyl-CoA dehydrogenase family member 11 Neighboring gene atypical chemokine receptor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in convergent extension IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in determination of left/right symmetry IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nephrocystin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelus ferus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCGSAC_Cfer_1.0 Primary Assembly

Genomic

  1. NC_045696.1 Reference BCGSAC_Cfer_1.0 Primary Assembly

    Range
    110454971..110487449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032488240.1 → XP_032344131.1  nephrocystin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8B8TPE2
    Conserved Domains (3) summary
    sd00006
    Location:1140 → 1168
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1187 → 1256
    TPR_12; Tetratricopeptide repeat
    pfam03938
    Location:127 → 206
    OmpH; Outer membrane protein (OmpH-like)

  2. XM_032488245.1 → XP_032344136.1  nephrocystin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8B8TPE6
    Related
    ENSCFEP00005005964.1, ENSCFET00005006775.1
    Conserved Domains (3) summary
    sd00006
    Location:1138 → 1166
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1185 → 1254
    TPR_12; Tetratricopeptide repeat
    pfam03938
    Location:127 → 206
    OmpH; Outer membrane protein (OmpH-like)

RNA

  1. XR_004323054.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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