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TTC12 tetratricopeptide repeat domain 12 [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102495590, updated on 10-Mar-2024

Summary

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Gene symbol
TTC12
Gene description
tetratricopeptide repeat domain 12
Locus tag
TREES_T100013253
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006159803.1 (7952360..8009894)

NW_006159803.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102491584 Neighboring gene neural cell adhesion molecule 1 Neighboring gene U6 spliceosomal RNA Neighboring gene ankyrin repeat and kinase domain containing 1 Neighboring gene dopamine receptor D2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006159803 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus. Yan H, et al. Elife, 2012 Nov 13. PMID 23150796, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 12
Names
Tetratricopeptide repeat protein 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006159803.1 Reference TupChi_1.0

    Range
    7952360..8009894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006151025.1 → XP_006151087.1  tetratricopeptide repeat protein 12 isoform X1

    See identical proteins and their annotated locations for XP_006151087.1

    UniProtKB/TrEMBL
    L9KP55
    Conserved Domains (5) summary
    cd00020
    Location:525 → 630
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00006
    Location:106 → 134
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:143 → 173
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:106 → 171
    TPR_11; TPR repeat
    sd00043
    Location:554 → 590
    ARM; armadillo repeat [structural motif]

  2. XM_006151029.3 → XP_006151091.1  tetratricopeptide repeat protein 12 isoform X2

    UniProtKB/TrEMBL
    L9KP55
    Conserved Domains (5) summary
    cd00020
    Location:525 → 630
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00006
    Location:106 → 134
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:143 → 173
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:106 → 171
    TPR_11; TPR repeat
    sd00043
    Location:554 → 590
    ARM; armadillo repeat [structural motif]

  3. XM_006151026.3 → XP_006151088.1  tetratricopeptide repeat protein 12 isoform X1

    See identical proteins and their annotated locations for XP_006151088.1

    UniProtKB/TrEMBL
    L9KP55
    Conserved Domains (5) summary
    cd00020
    Location:525 → 630
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00006
    Location:106 → 134
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:143 → 173
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:106 → 171
    TPR_11; TPR repeat
    sd00043
    Location:554 → 590
    ARM; armadillo repeat [structural motif]

  4. XM_006151027.3 → XP_006151089.1  tetratricopeptide repeat protein 12 isoform X1

    See identical proteins and their annotated locations for XP_006151089.1

    UniProtKB/TrEMBL
    L9KP55
    Conserved Domains (5) summary
    cd00020
    Location:525 → 630
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00006
    Location:106 → 134
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:143 → 173
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:106 → 171
    TPR_11; TPR repeat
    sd00043
    Location:554 → 590
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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