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ACAN aggrecan [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102484186, updated on 10-Mar-2024

Summary

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Gene symbol
ACAN
Gene description
aggrecan
Locus tag
TREES_T100018732
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Orthologs
human mouse all
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Genomic context

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See ACAN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006159855.1 (586239..623364)

NW_006159855.1Genomic Context describing neighboring genes Neighboring gene apoptosis enhancing nuclease Neighboring gene interferon stimulated exonuclease gene 20 Neighboring gene ubiquitin-like protein FUBI pseudogene Neighboring gene hyaluronan and proteoglycan link protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006159855 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aggrecan core protein
Names
Aggrecan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006159855.1 Reference TupChi_1.0

    Range
    586239..623364
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027773545.1 → XP_027629346.1  aggrecan core protein isoform X4

    UniProtKB/TrEMBL
    L9KJW2

  2. XM_027773544.1 → XP_027629345.1  aggrecan core protein isoform X3

    UniProtKB/TrEMBL
    L9KJW2

  3. XM_027773542.1 → XP_027629343.1  aggrecan core protein isoform X1

    UniProtKB/TrEMBL
    L9KJW2

  4. XM_027773543.1 → XP_027629344.1  aggrecan core protein isoform X2

    UniProtKB/TrEMBL
    L9KJW2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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