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ALS2 alsin Rho guanine nucleotide exchange factor ALS2 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102456896, updated on 10-Mar-2024

Summary

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Gene symbol
ALS2
Gene description
alsin Rho guanine nucleotide exchange factor ALS2
See related
Ensembl:ENSPSIG00000011464
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005857281.1 (58678..124560, complement)

NW_005857281.1Genomic Context describing neighboring genes Neighboring gene MAGUK p55 scaffold protein 4 Neighboring gene cyclin dependent kinase 15 Neighboring gene uncharacterized LOC112547041

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005857281 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alsin
Names
ALS2, alsin Rho guanine nucleotide exchange factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005857281.1 Reference PelSin_1.0 Primary Assembly

    Range
    58678..124560 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025188499.1 → XP_025044284.1  alsin

    UniProtKB/TrEMBL
    K7FYB5
    Related
    ENSPSIP00000013025.1, ENSPSIT00000013088.1
    Conserved Domains (7) summary
    cd13269
    Location:898 → 1003
    PH_alsin; Alsin Pleckstrin homology (PH) domain
    pfam00415
    Location:521 → 568
    RCC1; Regulator of chromosome condensation (RCC1) repeat
    pfam02204
    Location:1547 → 1646
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
    pfam13540
    Location:555 → 584
    RCC1_2; Regulator of chromosome condensation (RCC1) repeat
    cl02571
    Location:688 → 863
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl27415
    Location:1041 → 1205
    COG4642; Uncharacterized conserved protein [Function unknown]
    cl27697
    Location:15 → 219
    RCC1; Regulator of chromosome condensation (RCC1) repeat
Nucleotide Protein
Heading Accession and Version

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