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CHL1 cell adhesion molecule L1 like [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102456629, updated on 10-Mar-2024

Summary

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Gene symbol
CHL1
Gene description
cell adhesion molecule L1 like
See related
Ensembl:ENSPSIG00000002458
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005855044.1 (1917862..2136805, complement)

NW_005855044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112545690 Neighboring gene uncharacterized LOC106731986

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005855044 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule L1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005855044.1 Reference PelSin_1.0 Primary Assembly

    Range
    1917862..2136805 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025184366.1 → XP_025040151.1  neural cell adhesion molecule L1-like protein isoform X6

    Conserved Domains (8) summary
    cd05845
    Location:130 → 224
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00409
    Location:537 → 624
    IG; Immunoglobulin
    cd00063
    Location:932 → 1024
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:731 → 812
    fn3; Fibronectin type III domain
    pfam13882
    Location:1126 → 1165
    Bravo_FIGEY; Bravo-like intracellular region
    pfam13927
    Location:441 → 514
    Ig_3; Immunoglobulin domain
    cl11960
    Location:275 → 345
    Ig; Immunoglobulin domain
    cl21522
    Location:828 → 920
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  2. XM_025184364.1 → XP_025040149.1  neural cell adhesion molecule L1-like protein isoform X3

    Conserved Domains (8) summary
    cd05845
    Location:130 → 224
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00410
    Location:521 → 608
    IG_like; Immunoglobulin like
    cd00063
    Location:916 → 1008
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:715 → 796
    fn3; Fibronectin type III domain
    pfam13882
    Location:1110 → 1195
    Bravo_FIGEY; Bravo-like intracellular region
    pfam13927
    Location:425 → 498
    Ig_3; Immunoglobulin domain
    cl11960
    Location:259 → 329
    Ig; Immunoglobulin domain
    cl21522
    Location:812 → 904
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  3. XM_025184360.1 → XP_025040145.1  neural cell adhesion molecule L1-like protein isoform X1

    Conserved Domains (8) summary
    cd05845
    Location:130 → 224
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00409
    Location:537 → 624
    IG; Immunoglobulin
    cd00063
    Location:932 → 1024
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:731 → 812
    fn3; Fibronectin type III domain
    pfam13882
    Location:1126 → 1211
    Bravo_FIGEY; Bravo-like intracellular region
    pfam13927
    Location:441 → 514
    Ig_3; Immunoglobulin domain
    cl11960
    Location:275 → 345
    Ig; Immunoglobulin domain
    cl21522
    Location:828 → 920
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  4. XM_025184365.1 → XP_025040150.1  neural cell adhesion molecule L1-like protein isoform X5

    Conserved Domains (8) summary
    cd05845
    Location:130 → 224
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00410
    Location:537 → 624
    IG_like; Immunoglobulin like
    cd00063
    Location:932 → 1024
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:731 → 812
    fn3; Fibronectin type III domain
    pfam13882
    Location:1072 → 1157
    Bravo_FIGEY; Bravo-like intracellular region
    pfam13927
    Location:441 → 514
    Ig_3; Immunoglobulin domain
    cl11960
    Location:275 → 345
    Ig; Immunoglobulin domain
    cl21522
    Location:828 → 920
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  5. XM_006122489.3 → XP_006122551.1  neural cell adhesion molecule L1-like protein isoform X4

    UniProtKB/TrEMBL
    K7F394
    Related
    ENSPSIP00000002504.1, ENSPSIT00000002513.1
    Conserved Domains (9) summary
    cd00096
    Location:532 → 603
    Ig; Immunoglobulin domain
    cd05845
    Location:130 → 224
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00408
    Location:438 → 501
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:521 → 608
    IG_like; Immunoglobulin like
    cd00063
    Location:916 → 1008
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:236 → 328
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:715 → 796
    fn3; Fibronectin type III domain
    pfam13882
    Location:1105 → 1190
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:259 → 329
    Ig; Immunoglobulin domain

  6. XM_006122490.3 → XP_006122552.1  neural cell adhesion molecule L1-like protein isoform X7

    Conserved Domains (9) summary
    cd00096
    Location:548 → 619
    Ig; Immunoglobulin domain
    cd05845
    Location:130 → 224
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00408
    Location:454 → 517
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:537 → 624
    IG_like; Immunoglobulin like
    cd00063
    Location:932 → 1024
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:252 → 344
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:731 → 812
    fn3; Fibronectin type III domain
    pfam13882
    Location:1067 → 1152
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:275 → 345
    Ig; Immunoglobulin domain

  7. XM_006122485.2 → XP_006122547.1  neural cell adhesion molecule L1-like protein isoform X2

    See identical proteins and their annotated locations for XP_006122547.1

    UniProtKB/TrEMBL
    K7F396
    Related
    ENSPSIP00000002506.1, ENSPSIT00000002515.1
    Conserved Domains (9) summary
    cd00096
    Location:548 → 619
    Ig; Immunoglobulin domain
    cd05845
    Location:130 → 224
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00408
    Location:454 → 517
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:537 → 624
    IG_like; Immunoglobulin like
    cd00063
    Location:932 → 1024
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:252 → 344
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:731 → 812
    fn3; Fibronectin type III domain
    pfam13882
    Location:1121 → 1206
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:275 → 345
    Ig; Immunoglobulin domain

  8. XM_025184361.1 → XP_025040146.1  neural cell adhesion molecule L1-like protein isoform X1

    Conserved Domains (8) summary
    cd05845
    Location:130 → 224
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00409
    Location:537 → 624
    IG; Immunoglobulin
    cd00063
    Location:932 → 1024
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:731 → 812
    fn3; Fibronectin type III domain
    pfam13882
    Location:1126 → 1211
    Bravo_FIGEY; Bravo-like intracellular region
    pfam13927
    Location:441 → 514
    Ig_3; Immunoglobulin domain
    cl11960
    Location:275 → 345
    Ig; Immunoglobulin domain
    cl21522
    Location:828 → 920
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  9. XM_025184363.1 → XP_025040148.1  neural cell adhesion molecule L1-like protein isoform X1

    Conserved Domains (8) summary
    cd05845
    Location:130 → 224
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00409
    Location:537 → 624
    IG; Immunoglobulin
    cd00063
    Location:932 → 1024
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:731 → 812
    fn3; Fibronectin type III domain
    pfam13882
    Location:1126 → 1211
    Bravo_FIGEY; Bravo-like intracellular region
    pfam13927
    Location:441 → 514
    Ig_3; Immunoglobulin domain
    cl11960
    Location:275 → 345
    Ig; Immunoglobulin domain
    cl21522
    Location:828 → 920
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  10. XM_025184362.1 → XP_025040147.1  neural cell adhesion molecule L1-like protein isoform X1

    Conserved Domains (8) summary
    cd05845
    Location:130 → 224
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00409
    Location:537 → 624
    IG; Immunoglobulin
    cd00063
    Location:932 → 1024
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:731 → 812
    fn3; Fibronectin type III domain
    pfam13882
    Location:1126 → 1211
    Bravo_FIGEY; Bravo-like intracellular region
    pfam13927
    Location:441 → 514
    Ig_3; Immunoglobulin domain
    cl11960
    Location:275 → 345
    Ig; Immunoglobulin domain
    cl21522
    Location:828 → 920
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein
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