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CHD1 chromodomain helicase DNA binding protein 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102451522, updated on 10-Mar-2024

Summary

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Gene symbol
CHD1
Gene description
chromodomain helicase DNA binding protein 1
See related
Ensembl:ENSPSIG00000005807
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
38
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005856722.1 (549899..656191, complement)

NW_005856722.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102451033 Neighboring gene repulsive guidance molecule BMP co-receptor b Neighboring gene uncharacterized LOC106732404 Neighboring gene uncharacterized LOC112546754 Neighboring gene uncharacterized LOC112546753

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005856722 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Highly conserved linkage homology between birds and turtles: bird and turtle chromosomes are precise counterparts of each other. Matsuda Y, et al. Chromosome Res, 2005. PMID 16170625

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005856722.1 Reference PelSin_1.0 Primary Assembly

    Range
    549899..656191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025187612.1 → XP_025043397.1  chromodomain-helicase-DNA-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    K7FEP2
    Conserved Domains (5) summary
    cd00024
    Location:304 → 350
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:384 → 438
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam13907
    Location:1496 → 1586
    DUF4208; Domain of unknown function (DUF4208)
    cl25887
    Location:1645 → 1756
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl26465
    Location:459 → 995
    SNF2_N; SNF2 family N-terminal domain

  2. XM_025187610.1 → XP_025043395.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    K7FEP2
    Conserved Domains (5) summary
    cd00024
    Location:304 → 350
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:384 → 438
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam13907
    Location:1496 → 1586
    DUF4208; Domain of unknown function (DUF4208)
    cl25887
    Location:1646 → 1757
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl26465
    Location:459 → 995
    SNF2_N; SNF2 family N-terminal domain

  3. XM_006128780.3 → XP_006128842.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    K7FEP2
    Related
    ENSPSIP00000006502.1, ENSPSIT00000006539.1
    Conserved Domains (5) summary
    cd00024
    Location:304 → 350
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:384 → 438
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam13907
    Location:1496 → 1586
    DUF4208; Domain of unknown function (DUF4208)
    cl25887
    Location:1646 → 1757
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl26465
    Location:459 → 995
    SNF2_N; SNF2 family N-terminal domain

  4. XM_025187613.1 → XP_025043398.1  chromodomain-helicase-DNA-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    K7FEP2
    Conserved Domains (5) summary
    cd00024
    Location:304 → 350
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:384 → 438
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam13907
    Location:1496 → 1586
    DUF4208; Domain of unknown function (DUF4208)
    cl25887
    Location:1644 → 1755
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl26465
    Location:459 → 995
    SNF2_N; SNF2 family N-terminal domain

  5. XM_025187611.1 → XP_025043396.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    K7FEN2, K7FEP2
    Related
    ENSPSIP00000006492.1, ENSPSIT00000006529.1
    Conserved Domains (5) summary
    cd00024
    Location:304 → 350
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:384 → 438
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam13907
    Location:1496 → 1586
    DUF4208; Domain of unknown function (DUF4208)
    cl25887
    Location:1645 → 1756
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl26465
    Location:459 → 995
    SNF2_N; SNF2 family N-terminal domain
Nucleotide Protein
Heading Accession and Version

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