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SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [ Myotis lucifugus (little brown bat) ]

Gene ID: 102420528, updated on 30-Mar-2024

Summary

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Gene symbol
SVEP1
Gene description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
See related
Ensembl:ENSMLUG00000014118
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis lucifugus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
48
Annotation release Status Assembly Chr Location
102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871091.1 (1735292..1884612)

NW_005871091.1Genomic Context describing neighboring genes Neighboring gene lysophosphatidic acid receptor 1 Neighboring gene muscle associated receptor tyrosine kinase Neighboring gene non-histone chromosomal protein HMG-14-like Neighboring gene U6 spliceosomal RNA Neighboring gene 5'-nucleotidase domain-containing protein 1 Neighboring gene chromosome unknown C9orf152 homolog Neighboring gene thioredoxin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871091 Unplaced Scaffold Reference Myoluc2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of complement activation, classical pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Myoluc2.0

Genomic

  1. NW_005871091.1 Reference Myoluc2.0

    Range
    1735292..1884612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014455199.2 → XP_014310685.1  LOW QUALITY PROTEIN: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1

    UniProtKB/TrEMBL
    G1PPD4
    Related
    ENSMLUP00000012861.2, ENSMLUT00000014138.2
    Conserved Domains (11) summary
    cd00033
    Location:1845 → 1899
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:1688 → 1741
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    smart00179
    Location:1743 → 1781
    EGF_CA; Calcium-binding EGF-like domain
    PHA02927
    Location:1787 → 2015
    PHA02927; secreted complement-binding protein; Provisional
    cd00054
    Location:1381 → 1417
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:1195 → 1224
    EGF; EGF-like domain
    pfam00084
    Location:1787 → 1840
    Sushi; Sushi repeat (SCR repeat)
    pfam00092
    Location:84 → 257
    VWA; von Willebrand factor type A domain
    pfam07699
    Location:1111 → 1158
    GCC2_GCC3; GCC2 and GCC3
    cl03620
    Location:559 → 641
    DUF5011; Domain of unknown function (DUF5011)
    cl22861
    Location:1422 → 1620
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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