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MKS1 MKS transition zone complex subunit 1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102415543, updated on 10-Mar-2024

Summary

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Gene symbol
MKS1
Gene description
MKS transition zone complex subunit 1
See related
EnsemblRapid:ENSBALG00030004518
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
21
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 3 NC_059159.1 (54040296..54056279)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 3 NC_058345.1 (53460895..53476874)

Chromosome 3 - NC_059159.1Genomic Context describing neighboring genes Neighboring gene lactoperoxidase Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC112583808 Neighboring gene uncharacterized LOC123332720 Neighboring gene eosinophil peroxidase Neighboring gene olfactory receptor 4D2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MKS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Meckel syndrome type 1 protein
Names
Meckel syndrome, type 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059159.1 Reference NDDB_SH_1 Primary Assembly

    Range
    54040296..54056279
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025281236.2 → XP_025137021.1  Meckel syndrome type 1 protein isoform X2

    Related
    ENSBALP00030008346.1, ENSBALT00030012686.1
    Conserved Domains (1) summary
    pfam07162
    Location:334 → 507
    B9-C2; Ciliary basal body-associated, B9 protein

  2. XM_025281241.2 → XP_025137026.1  Meckel syndrome type 1 protein isoform X6

    Conserved Domains (1) summary
    pfam07162
    Location:319 → 462
    B9-C2; Ciliary basal body-associated, B9 protein

  3. XM_044939636.1 → XP_044795571.1  Meckel syndrome type 1 protein isoform X4

  4. XM_025281240.2 → XP_025137025.1  Meckel syndrome type 1 protein isoform X5

    Conserved Domains (1) summary
    pfam07162
    Location:340 → 445
    B9-C2; Ciliary basal body-associated, B9 protein

  5. XM_025281235.2 → XP_025137020.1  Meckel syndrome type 1 protein isoform X1

    Related
    ENSBALP00030008296.1, ENSBALT00030012621.1
    Conserved Domains (1) summary
    pfam07162
    Location:340 → 513
    B9-C2; Ciliary basal body-associated, B9 protein

  6. XM_025281237.2 → XP_025137022.1  Meckel syndrome type 1 protein isoform X3

    Related
    ENSBALP00030008288.1, ENSBALT00030012612.1
    Conserved Domains (1) summary
    pfam07162
    Location:319 → 492
    B9-C2; Ciliary basal body-associated, B9 protein
Nucleotide Protein
Heading Accession and Version

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