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EDN3 endothelin 3 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102414515, updated on 10-Mar-2024

Summary

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Gene symbol
EDN3
Gene description
endothelin 3
See related
EnsemblRapid:ENSBALG00030039878
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
4
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 14 NC_059170.1 (26512071..26536911)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 14 NC_058356.1 (25922832..25947658)

Chromosome 14 - NC_059170.1Genomic Context describing neighboring genes Neighboring gene PRELI domain containing 3B Neighboring gene zinc finger protein 831 Neighboring gene phosphatase and actin regulator 3 Neighboring gene uncharacterized LOC123329195 Neighboring gene synaptonemal complex protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endothelin B receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hormone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of prostaglandin-endoperoxide synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of systemic arterial blood pressure by endothelin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of vasoconstriction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vein smooth muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endothelin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059170.1 Reference NDDB_SH_1 Primary Assembly

    Range
    26512071..26536911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045162667.1 → XP_045018602.1  endothelin-3 isoform X2

  2. XM_045162668.1 → XP_045018603.1  endothelin-3 isoform X3

    Conserved Domains (2) summary
    pfam00322
    Location:85 → 113
    Endothelin; Endothelin family
    cl27714
    Location:139 → 166
    Endothelin; Endothelin family

  3. XM_006049057.4 → XP_006049119.1  endothelin-3 isoform X1

    Related
    ENSBALP00030073492.1, ENSBALT00030110241.1
    Conserved Domains (1) summary
    pfam00322
    Location:85 → 113
    Endothelin; Endothelin family
Nucleotide Protein
Heading Accession and Version

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