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SYT12 synaptotagmin 12 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102407088, updated on 10-Mar-2024

Summary

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Gene symbol
SYT12
Gene description
synaptotagmin 12
See related
EnsemblRapid:ENSBALG00030041621
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 5 NC_059161.1 (126484486..126507907)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 5 NC_058347.1 (124716623..124740037)

Chromosome 5 - NC_059161.1Genomic Context describing neighboring genes Neighboring gene pyruvate carboxylase Neighboring gene leucine rich repeat and fibronectin type III domain containing 4 Neighboring gene chromosome 5 C11orf86 homolog Neighboring gene uncharacterized LOC123333824 Neighboring gene ras homolog family member D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylserine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium-ion regulated exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to calcium ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of calcium ion-dependent exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dopamine secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059161.1 Reference NDDB_SH_1 Primary Assembly

    Range
    126484486..126507907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006072685.4 → XP_006072747.3  synaptotagmin-12 isoform X1

    Related
    ENSBALP00030076729.1, ENSBALT00030115062.1
    Conserved Domains (2) summary
    cd08406
    Location:284 → 419
    C2B_Synaptotagmin-12; C2 domain second repeat present in Synaptotagmin 12
    cl14603
    Location:152 → 263
    C2; C2 domain

  2. XM_044943759.2 → XP_044799694.1  synaptotagmin-12 isoform X2

    Conserved Domains (2) summary
    cd08406
    Location:169 → 304
    C2B_Synaptotagmin-12; C2 domain second repeat present in Synaptotagmin 12
    cl14603
    Location:37 → 148
    C2; C2 domain
Nucleotide Protein
Heading Accession and Version

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