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KDM4B lysine demethylase 4B [ Bubalus bubalis (water buffalo) ]

Gene ID: 102406406, updated on 10-Mar-2024

Summary

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Gene symbol
KDM4B
Gene description
lysine demethylase 4B
See related
EnsemblRapid:ENSBALG00030008499
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
27
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 9 NC_059165.1 (92004420..92126517)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 9 NC_058351.1 (90910895..91033027)

Chromosome 9 - NC_059165.1Genomic Context describing neighboring genes Neighboring gene perilipin 3 Neighboring gene arrestin domain containing 5 Neighboring gene ubiquitin like with PHD and ring finger domains 1 Neighboring gene protein tyrosine phosphatase receptor type S Neighboring gene zinc and ring finger 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059165.1 Reference NDDB_SH_1 Primary Assembly

    Range
    92004420..92126517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044947972.2 → XP_044803907.2  lysine-specific demethylase 4B isoform X1

    Related
    ENSBALP00030016022.1, ENSBALT00030023812.1
    Conserved Domains (6) summary
    smart00545
    Location:15 → 56
    JmjN; Small domain found in the jumonji family of transcription factors
    cd15576
    Location:703 → 808
    PHD_JMJD2B; PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
    cd15714
    Location:817 → 926
    ePHD_JMJD2B; Extended PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
    pfam02373
    Location:176 → 292
    JmjC; JmjC domain, hydroxylase
    cd20464
    Location:939 → 991
    Tudor_JMJD2B_rpt1; first Tudor domain found in Jumonji domain-containing protein 2B (JMJD2B) and similar proteins
    cd20467
    Location:996 → 1051
    Tudor_JMJD2B_rpt2; second Tudor domain found in Jumonji domain-containing protein 2B (JMJD2B) and similar proteins

  2. XM_044947973.2 → XP_044803908.2  lysine-specific demethylase 4B isoform X2

    Related
    ENSBALP00030016047.1, ENSBALT00030023844.1

  3. XM_044947975.1 → XP_044803910.1  lysine-specific demethylase 4B isoform X4

    Conserved Domains (2) summary
    smart00545
    Location:15 → 56
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:149 → 206
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily

  4. XM_044947974.1 → XP_044803909.1  lysine-specific demethylase 4B isoform X3

    Conserved Domains (2) summary
    smart00545
    Location:15 → 56
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:149 → 206
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily

  5. XM_044947978.1 → XP_044803913.1  lysine-specific demethylase 4B isoform X7

    Conserved Domains (2) summary
    smart00545
    Location:15 → 56
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:149 → 206
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily

  6. XM_044947976.1 → XP_044803911.1  lysine-specific demethylase 4B isoform X5

    Conserved Domains (2) summary
    smart00545
    Location:15 → 56
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:149 → 206
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily

  7. XM_044947977.1 → XP_044803912.1  lysine-specific demethylase 4B isoform X6

    Conserved Domains (2) summary
    smart00545
    Location:15 → 56
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:149 → 206
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily

RNA

  1. XR_006553497.1 RNA Sequence

  2. XR_006553498.1 RNA Sequence

Nucleotide Protein
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