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HEPACAM2 HEPACAM family member 2 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102405499, updated on 10-Mar-2024

Summary

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Gene symbol
HEPACAM2
Gene description
HEPACAM family member 2
See related
EnsemblRapid:ENSBALG00030014838
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See HEPACAM2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 8 NC_059164.1 (10207679..10260658, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 8 NC_058350.1 (10167618..10220625, complement)

Chromosome 8 - NC_059164.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene sterile alpha motif domain-containing protein 9 Neighboring gene uncharacterized LOC102404834 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1-like Neighboring gene VPS50 subunit of EARP/GARPII complex Neighboring gene calcitonin receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
HEPACAM family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059164.1 Reference NDDB_SH_1 Primary Assembly

    Range
    10207679..10260658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006078332.3 → XP_006078394.2  HEPACAM family member 2 isoform X5

    Conserved Domains (2) summary
    smart00408
    Location:194 → 253
    IGc2; Immunoglobulin C-2 Type
    cd00096
    Location:194 → 197
    Ig; Ig strand B [structural motif]

  2. XM_006078328.3 → XP_006078390.2  HEPACAM family member 2 isoform X1

    Related
    ENSBALP00030027421.1, ENSBALT00030041418.1
    Conserved Domains (2) summary
    smart00408
    Location:194 → 253
    IGc2; Immunoglobulin C-2 Type
    cd00096
    Location:194 → 197
    Ig; Ig strand B [structural motif]

  3. XM_044946432.1 → XP_044802367.1  HEPACAM family member 2 isoform X3

    Conserved Domains (2) summary
    smart00408
    Location:167 → 226
    IGc2; Immunoglobulin C-2 Type
    cd00096
    Location:167 → 170
    Ig; Ig strand B [structural motif]

  4. XM_044946431.1 → XP_044802366.1  HEPACAM family member 2 isoform X2

    Related
    ENSBALP00030027436.1, ENSBALT00030041442.1
    Conserved Domains (2) summary
    smart00408
    Location:168 → 227
    IGc2; Immunoglobulin C-2 Type
    cd00096
    Location:168 → 171
    Ig; Ig strand B [structural motif]

  5. XM_006078331.3 → XP_006078393.2  HEPACAM family member 2 isoform X4

    Related
    ENSBALP00030027327.1, ENSBALT00030041248.1
    Conserved Domains (2) summary
    smart00408
    Location:155 → 214
    IGc2; Immunoglobulin C-2 Type
    cd00096
    Location:155 → 158
    Ig; Ig strand B [structural motif]

  6. XM_025290854.2 → XP_025146639.2  HEPACAM family member 2 isoform X6

    Conserved Domains (2) summary
    smart00408
    Location:194 → 253
    IGc2; Immunoglobulin C-2 Type
    cd00096
    Location:194 → 197
    Ig; Ig strand B [structural motif]

  7. XM_006078333.3 → XP_006078395.2  HEPACAM family member 2 isoform X7

    Conserved Domains (2) summary
    smart00408
    Location:167 → 226
    IGc2; Immunoglobulin C-2 Type
    cd00096
    Location:167 → 170
    Ig; Ig strand B [structural motif]
Nucleotide Protein
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