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KHDC4 KH domain containing 4, pre-mRNA splicing factor [ Bubalus bubalis (water buffalo) ]

Gene ID: 102396539, updated on 10-Mar-2024

Summary

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Gene symbol
KHDC4
Gene description
KH domain containing 4, pre-mRNA splicing factor
See related
EnsemblRapid:ENSBALG00030029601
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Also known as
KIAA0907
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 6 NC_059162.1 (14898814..14916021)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 6 NC_058348.1 (14632763..14649972)

Chromosome 6 - NC_059162.1Genomic Context describing neighboring genes Neighboring gene Rho/Rac guanine nucleotide exchange factor 2 Neighboring gene relaxin family peptide/INSL5 receptor 4 Neighboring gene small Cajal body-specific RNA 4 Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene Ras like without CAAX 1 Neighboring gene synaptotagmin 11 Neighboring gene YY1-associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KH homology domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059162.1 Reference NDDB_SH_1 Primary Assembly

    Range
    14898814..14916021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025287691.2 → XP_025143476.1  KH homology domain-containing protein 4 isoform X2

    Conserved Domains (1) summary
    cl00098
    Location:164 → 254
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

  2. XM_006052018.3 → XP_006052080.1  KH homology domain-containing protein 4 isoform X1

    See identical proteins and their annotated locations for XP_006052080.1

    Related
    ENSBALP00030054982.1, ENSBALT00030082070.1
    Conserved Domains (2) summary
    cd22385
    Location:99 → 182
    KH-I_KHDC4_rpt1; first type I K homology (KH) RNA-binding domain found in KH homology domain-containing protein 4 (KHDC4) and similar proteins
    cd22386
    Location:229 → 330
    KH-I_KHDC4_rpt2; first type I K homology (KH) RNA-binding domain found in KH homology domain-containing protein 4 (KHDC4) and similar proteins

  3. XM_006052019.3 → XP_006052081.1  KH homology domain-containing protein 4 isoform X3

    See identical proteins and their annotated locations for XP_006052081.1

    Related
    ENSBALP00030054972.1, ENSBALT00030082057.1
    Conserved Domains (2) summary
    cd22385
    Location:99 → 182
    KH-I_KHDC4_rpt1; first type I K homology (KH) RNA-binding domain found in KH homology domain-containing protein 4 (KHDC4) and similar proteins
    cd22386
    Location:229 → 330
    KH-I_KHDC4_rpt2; first type I K homology (KH) RNA-binding domain found in KH homology domain-containing protein 4 (KHDC4) and similar proteins
Nucleotide Protein
Heading Accession and Version

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