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PRPF18 pre-mRNA processing factor 18 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102393967, updated on 10-Mar-2024

Summary

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Gene symbol
PRPF18
Gene description
pre-mRNA processing factor 18
See related
EnsemblRapid:ENSBALG00030016761
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See PRPF18 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
19
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 14 NC_059170.1 (55476887..55557347, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 14 NC_058356.1 (54644545..54725012, complement)

Chromosome 14 - NC_059170.1Genomic Context describing neighboring genes Neighboring gene FERM domain containing 4A Neighboring gene uncharacterized LOC123464902 Neighboring gene uncharacterized LOC123329250 Neighboring gene BEN domain containing 7 Neighboring gene mitotic checkpoint serine/threonine-protein kinase BUB1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in generation of catalytic spliceosome for second transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type post-spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059170.1 Reference NDDB_SH_1 Primary Assembly

    Range
    55476887..55557347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044928119.2 → XP_044784054.1  pre-mRNA-splicing factor 18 isoform X1

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain

  2. XM_044928118.2 → XP_044784053.1  pre-mRNA-splicing factor 18 isoform X1

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain

  3. XM_044928128.2 → XP_044784063.1  pre-mRNA-splicing factor 18 isoform X1

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain

  4. XM_044928117.2 → XP_044784052.1  pre-mRNA-splicing factor 18 isoform X1

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain

  5. XM_044928124.2 → XP_044784059.1  pre-mRNA-splicing factor 18 isoform X1

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain

  6. XM_044928127.2 → XP_044784062.1  pre-mRNA-splicing factor 18 isoform X1

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain

  7. XM_044928123.2 → XP_044784058.1  pre-mRNA-splicing factor 18 isoform X1

    Related
    ENSBALP00030031657.1, ENSBALT00030047055.1
    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain

  8. XM_044928121.2 → XP_044784056.1  pre-mRNA-splicing factor 18 isoform X1

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain

  9. XM_044928120.2 → XP_044784055.1  pre-mRNA-splicing factor 18 isoform X1

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain

  10. XM_006066022.4 → XP_006066084.2  pre-mRNA-splicing factor 18 isoform X1

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain

  11. XM_044928116.2 → XP_044784051.1  pre-mRNA-splicing factor 18 isoform X1

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain

  12. XM_044928126.2 → XP_044784061.1  pre-mRNA-splicing factor 18 isoform X1

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain

  13. XM_044928125.2 → XP_044784060.1  pre-mRNA-splicing factor 18 isoform X1

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain

  14. XM_044928115.2 → XP_044784050.1  pre-mRNA-splicing factor 18 isoform X1

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain

  15. XM_044928129.2 → XP_044784064.1  pre-mRNA-splicing factor 18 isoform X2

    Related
    ENSBALP00030031644.1, ENSBALT00030047037.1
    Conserved Domains (2) summary
    smart00500
    Location:79 → 122
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:191 → 327
    Prp18; Prp18 domain

  16. XM_025264641.3 → XP_025120426.1  pre-mRNA-splicing factor 18 isoform X3

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:204 → 273
    Prp18; Prp18 domain
Nucleotide Protein
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