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BBS9 Bardet-Biedl syndrome 9 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102378685, updated on 10-Mar-2024

Summary

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Gene symbol
BBS9
Gene description
Bardet-Biedl syndrome 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See BBS9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841971.1 (1170118..1643980)

NW_005841971.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112549819 Neighboring gene uncharacterized LOC112549818 Neighboring gene FKBP prolyl isomerase 9 Neighboring gene 5'-nucleotidase, cytosolic IIIA Neighboring gene BMP binding endothelial regulator Neighboring gene uncharacterized LOC102379423 Neighboring gene neuropeptide S receptor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841971 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BBSome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein PTHB1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841971.1 Reference ASM45574v1 Primary Assembly

    Range
    1170118..1643980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025200564.1 → XP_025056349.1  protein PTHB1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0G9N1
    Conserved Domains (2) summary
    pfam14727
    Location:1 → 417
    PHTB1_N; PTHB1 N-terminus
    pfam14728
    Location:443 → 819
    PHTB1_C; PTHB1 C-terminus

  2. XM_014518627.2 → XP_014374113.1  protein PTHB1 isoform X4

    UniProtKB/TrEMBL
    A0A1U8CYI2
    Conserved Domains (2) summary
    pfam14727
    Location:2 → 417
    PHTB1_N; PTHB1 N-terminus
    pfam14728
    Location:443 → 819
    PHTB1_C; PTHB1 C-terminus

  3. XM_014518629.2 → XP_014374115.1  protein PTHB1 isoform X6

    UniProtKB/TrEMBL
    A0A1U8DAD4
    Conserved Domains (2) summary
    pfam14727
    Location:2 → 417
    PHTB1_N; PTHB1 N-terminus
    pfam14728
    Location:443 → 819
    PHTB1_C; PTHB1 C-terminus

  4. XM_025200565.1 → XP_025056350.1  protein PTHB1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0GD40
    Conserved Domains (2) summary
    pfam14727
    Location:1 → 417
    PHTB1_N; PTHB1 N-terminus
    pfam14728
    Location:443 → 818
    PHTB1_C; PTHB1 C-terminus

  5. XM_025200566.1 → XP_025056351.1  protein PTHB1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0G9M4
    Conserved Domains (2) summary
    pfam14727
    Location:1 → 417
    PHTB1_N; PTHB1 N-terminus
    pfam14728
    Location:443 → 813
    PHTB1_C; PTHB1 C-terminus

  6. XM_025200568.1 → XP_025056353.1  protein PTHB1 isoform X5

    UniProtKB/TrEMBL
    A0A3Q0GDZ0
    Conserved Domains (2) summary
    pfam14727
    Location:9 → 388
    PHTB1_N; PTHB1 N-terminus
    pfam14728
    Location:414 → 790
    PHTB1_C; PTHB1 C-terminus

RNA

  1. XR_003093361.1 RNA Sequence

  2. XR_003093362.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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