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EFNB2 ephrin B2 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102377317, updated on 10-Mar-2024

Summary

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Gene symbol
EFNB2
Gene description
ephrin B2
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841907.1 (3205562..3253769, complement)

NW_005841907.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106721898 Neighboring gene uncharacterized LOC102377081 Neighboring gene U1 spliceosomal RNA Neighboring gene arginine and glutamate rich 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841907 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ephrin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ephrin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ephrin-B2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841907.1 Reference ASM45574v1 Primary Assembly

    Range
    3205562..3253769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006018605.3 → XP_006018667.1  ephrin-B2 isoform X3

    UniProtKB/TrEMBL
    A0A1U7RTE9
    Conserved Domains (1) summary
    cd10426
    Location:32 → 157
    Ephrin-B_Ectodomain; Ectodomain of Ephrin B

  2. XM_025197852.1 → XP_025053637.1  ephrin-B2 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0G2E8

  3. XM_006018603.3 → XP_006018665.1  ephrin-B2 isoform X1

    See identical proteins and their annotated locations for XP_006018665.1

    UniProtKB/TrEMBL
    A0A1U7RQT2
    Conserved Domains (1) summary
    cd10426
    Location:36 → 172
    Ephrin-B_Ectodomain; Ectodomain of Ephrin B

  4. XM_025197851.1 → XP_025053636.1  ephrin-B2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0G1I0
    Conserved Domains (1) summary
    cd10426
    Location:36 → 172
    Ephrin-B_Ectodomain; Ectodomain of Ephrin B

RNA

  1. XR_003092836.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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