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SEMA3F semaphorin 3F [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102376458, updated on 10-Mar-2024

Summary

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Gene symbol
SEMA3F
Gene description
semaphorin 3F
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842079.1 (71693..187675)

NW_005842079.1Genomic Context describing neighboring genes Neighboring gene G protein subunit alpha transducin 1 Neighboring gene G protein subunit alpha i2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842079 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-3F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842079.1 Reference ASM45574v1 Primary Assembly

    Range
    71693..187675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006023740.3 → XP_006023802.1  semaphorin-3F isoform X1

    See identical proteins and their annotated locations for XP_006023802.1

    UniProtKB/TrEMBL
    A0A1U7RPS1
    Conserved Domains (4) summary
    cd05871
    Location:608 → 696
    Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
    cd11254
    Location:48 → 547
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00410
    Location:613 → 695
    IG_like; Immunoglobulin like
    smart00423
    Location:546 → 572
    PSI; domain found in Plexins, Semaphorins and Integrins

  2. XM_025204371.1 → XP_025060156.1  semaphorin-3F isoform X3

    UniProtKB/TrEMBL
    A0A3Q0GKC0
    Conserved Domains (3) summary
    cd05871
    Location:568 → 656
    Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
    smart00423
    Location:506 → 532
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl15693
    Location:48 → 507
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  3. XM_006023741.3 → XP_006023803.1  semaphorin-3F isoform X2

    See identical proteins and their annotated locations for XP_006023803.1

    UniProtKB/TrEMBL
    A0A1U7S155
    Conserved Domains (4) summary
    cd05871
    Location:578 → 666
    Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
    cd11254
    Location:48 → 517
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00410
    Location:583 → 665
    IG_like; Immunoglobulin like
    smart00423
    Location:516 → 542
    PSI; domain found in Plexins, Semaphorins and Integrins

  4. XM_025204373.1 → XP_025060158.1  semaphorin-3F isoform X5

    UniProtKB/TrEMBL
    A0A3Q0GPN7
    Conserved Domains (3) summary
    cd05871
    Location:538 → 626
    Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
    smart00423
    Location:476 → 502
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl15693
    Location:48 → 477
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  5. XM_025204372.1 → XP_025060157.1  semaphorin-3F isoform X4

    UniProtKB/TrEMBL
    A0A3Q0GL56
    Conserved Domains (3) summary
    cd05871
    Location:540 → 628
    Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
    cd11254
    Location:1 → 479
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:478 → 504
    PSI; domain found in Plexins, Semaphorins and Integrins
Nucleotide Protein
Heading Accession and Version

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