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astn1 astrotactin 1 [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102308430, updated on 10-Mar-2024

Summary

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Gene symbol
astn1
Gene description
astrotactin 1
See related
Ensembl:ENSHBUG00000006223
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582546.1 (352286..839786)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179615.1 (315659..781113)

NW_024582546.1Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein/retinoic acid inducible neural-specific 2 Neighboring gene pappalysin 2 Neighboring gene tripartite motif-containing protein 29-like Neighboring gene COP1 E3 ubiquitin ligase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron migration IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
astrotactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582546.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    352286..839786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005936984.3 → XP_005937046.1  astrotactin-1 isoform X1

    See identical proteins and their annotated locations for XP_005937046.1

    UniProtKB/TrEMBL
    A0A3Q2V207
    Conserved Domains (2) summary
    pfam14670
    Location:683 → 730
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl02616
    Location:835 → 1029
    MACPF; MAC/Perforin domain

  2. XM_005936986.3 → XP_005937048.1  astrotactin-1 isoform X4

    See identical proteins and their annotated locations for XP_005937048.1

    UniProtKB/TrEMBL
    A0A3Q2V207
    Related
    ENSHBUP00000004778.1
    Conserved Domains (2) summary
    pfam14670
    Location:669 → 716
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl02616
    Location:821 → 1015
    MACPF; MAC/Perforin domain

  3. XM_042225858.1 → XP_042081792.1  astrotactin-1 isoform X5

    UniProtKB/TrEMBL
    A0A3Q2V207
    Conserved Domains (3) summary
    pfam14670
    Location:668 → 715
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    pfam18411
    Location:1168 → 1260
    Annexin_like; Annexin-like domain
    cl02616
    Location:820 → 1014
    MACPF; MAC/Perforin domain

  4. XM_042225859.1 → XP_042081793.1  astrotactin-1 isoform X6

    UniProtKB/TrEMBL
    A0A3Q2V207
    Conserved Domains (1) summary
    cl02616
    Location:785 → 979
    MACPF; MAC/Perforin domain

  5. XM_042225857.1 → XP_042081791.1  astrotactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2V207
    Conserved Domains (3) summary
    pfam14670
    Location:682 → 729
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    pfam18411
    Location:1182 → 1274
    Annexin_like; Annexin-like domain
    cl02616
    Location:834 → 1028
    MACPF; MAC/Perforin domain

  6. XM_005936988.3 → XP_005937050.1  astrotactin-1 isoform X7

    See identical proteins and their annotated locations for XP_005937050.1

    UniProtKB/TrEMBL
    A0A3Q2V207
    Related
    ENSHBUP00000004797.1
    Conserved Domains (2) summary
    pfam14670
    Location:632 → 679
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl02616
    Location:784 → 978
    MACPF; MAC/Perforin domain

  7. XM_005936985.3 → XP_005937047.1  astrotactin-1 isoform X3

    See identical proteins and their annotated locations for XP_005937047.1

    UniProtKB/TrEMBL
    A0A3Q2V207
    Related
    ENSHBUP00000004801.1
    Conserved Domains (2) summary
    pfam14670
    Location:674 → 721
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl02616
    Location:826 → 1020
    MACPF; MAC/Perforin domain

  8. XM_042225860.1 → XP_042081794.1  astrotactin-1 isoform X8

    UniProtKB/TrEMBL
    A0A3Q2V207
    Conserved Domains (3) summary
    pfam14670
    Location:659 → 706
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    pfam18411
    Location:1159 → 1251
    Annexin_like; Annexin-like domain
    cl02616
    Location:811 → 1005
    MACPF; MAC/Perforin domain
Nucleotide Protein
Heading Accession and Version

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