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sema5ba sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Ba [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102305853, updated on 10-Mar-2024

Summary

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Gene symbol
sema5ba
Gene description
sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Ba
See related
Ensembl:ENSHBUG00000011332
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Also known as
sema5b
Orthologs
human zebrafish all
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Genomic context

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See sema5ba in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582636.1 (426469..618377)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179680.1 (408002..599692)

NW_024582636.1Genomic Context describing neighboring genes Neighboring gene SEC22 homolog A, vesicle trafficking protein Neighboring gene protein disulfide isomerase family A, member 5 Neighboring gene solute carrier family 49 member 4 Neighboring gene hspb associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon extension IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-5B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582636.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    426469..618377
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042227660.1 → XP_042083594.1  semaphorin-5B isoform X3

    UniProtKB/TrEMBL
    A0A3Q2VFT8
    Conserved Domains (3) summary
    smart00209
    Location:619 → 672
    TSP1; Thrombospondin type 1 repeats
    smart00423
    Location:506 → 544
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl15693
    Location:69 → 505
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_042227661.1 → XP_042083595.1  semaphorin-5B isoform X3

    UniProtKB/TrEMBL
    A0A3Q2VFT8
    Conserved Domains (3) summary
    smart00209
    Location:619 → 672
    TSP1; Thrombospondin type 1 repeats
    smart00423
    Location:506 → 544
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl15693
    Location:69 → 505
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  3. XM_042227658.1 → XP_042083592.1  semaphorin-5B isoform X1

    UniProtKB/TrEMBL
    A0A3Q2VFT8
    Conserved Domains (3) summary
    smart00209
    Location:647 → 700
    TSP1; Thrombospondin type 1 repeats
    smart00423
    Location:534 → 572
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl15693
    Location:97 → 533
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  4. XM_042227659.1 → XP_042083593.1  semaphorin-5B isoform X2

    UniProtKB/TrEMBL
    A0A3Q2VFT8
    Conserved Domains (3) summary
    smart00209
    Location:647 → 700
    TSP1; Thrombospondin type 1 repeats
    smart00423
    Location:534 → 572
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl15693
    Location:97 → 533
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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