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ddx56 DEAD (Asp-Glu-Ala-Asp) box helicase 56 [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102304553, updated on 10-Mar-2024

Summary

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Gene symbol
ddx56
Gene description
DEAD (Asp-Glu-Ala-Asp) box helicase 56
See related
Ensembl:ENSHBUG00000015246
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
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Genomic context

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See ddx56 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582909.1 (68905..85584)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179973.1 (262650..279196, complement)

NW_024582909.1Genomic Context describing neighboring genes Neighboring gene zinc finger, MIZ-type containing 2 Neighboring gene peptidyl-prolyl cis-trans isomerase Neighboring gene dual specificity phosphatase 26 Neighboring gene adipocyte enhancer-binding protein 1-like Neighboring gene uncharacterized LOC121812352

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX56
Names
DEAD-box helicase 56

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582909.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    68905..85584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042214312.1 → XP_042070246.1  probable ATP-dependent RNA helicase DDX56

    UniProtKB/TrEMBL
    A0A3Q2VY04
    Conserved Domains (2) summary
    COG0513
    Location:7 → 494
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17961
    Location:13 → 217
    DEADc_DDX56; DEAD-box helicase domain of DEAD box protein 56
Nucleotide Protein
Heading Accession and Version

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