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upf2 UPF2 regulator of nonsense mediated mRNA decay [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102296965, updated on 12-Sep-2024

Summary

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Gene symbol
upf2
Gene description
UPF2 regulator of nonsense mediated mRNA decay
See related
Ensembl:ENSHBUG00000004249
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582405.1 (2030908..2052982, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179440.1 (2000068..2017341, complement)

NW_024582405.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 19 Neighboring gene RAB3A interacting protein (rabin3) Neighboring gene extensin Neighboring gene solute carrier family 35 member E3 Neighboring gene nucleoporin 107 Neighboring gene MDM2 proto-oncogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of exon-exon junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulator of nonsense transcripts 2
Names
UPF2 regulator of nonsense transcripts homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582405.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    2030908..2052982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042220175.1 → XP_042076109.1  regulator of nonsense transcripts 2 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2WED1
    Conserved Domains (3) summary
    smart00543
    Location:570 → 757
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:775 → 985
    MIF4G; MIF4G domain
    pfam04050
    Location:1099 → 1221
    Upf2; Up-frameshift suppressor 2

  2. XM_042220174.1 → XP_042076108.1  regulator of nonsense transcripts 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2WED1
    Conserved Domains (3) summary
    smart00543
    Location:570 → 757
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:775 → 985
    MIF4G; MIF4G domain
    pfam04050
    Location:1099 → 1221
    Upf2; Up-frameshift suppressor 2

  3. XM_014333228.2 → XP_014188714.1  regulator of nonsense transcripts 2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2WED1, A0A3Q2WMU7
    Related
    ENSHBUP00000023399.1
    Conserved Domains (3) summary
    smart00543
    Location:570 → 757
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:775 → 985
    MIF4G; MIF4G domain
    pfam04050
    Location:1099 → 1221
    Upf2; Up-frameshift suppressor 2

  4. XM_005921055.3 → XP_005921117.2  regulator of nonsense transcripts 2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2WED1, A0A3Q2WMU7
    Conserved Domains (3) summary
    smart00543
    Location:570 → 757
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:775 → 985
    MIF4G; MIF4G domain
    pfam04050
    Location:1099 → 1221
    Upf2; Up-frameshift suppressor 2

  5. XM_005921056.3 → XP_005921118.2  regulator of nonsense transcripts 2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2WED1, A0A3Q2WMU7
    Conserved Domains (3) summary
    smart00543
    Location:570 → 757
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:775 → 985
    MIF4G; MIF4G domain
    pfam04050
    Location:1099 → 1221
    Upf2; Up-frameshift suppressor 2
Nucleotide Protein
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