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SNX2 sorting nexin 2 [ Myotis brandtii (Brandt's bat) ]

Gene ID: 102251840, updated on 30-Mar-2024

Summary

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Gene symbol
SNX2
Gene description
sorting nexin 2
Locus tag
D623_10015772
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis brandtii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current ASM41265v1 (GCF_000412655.1) Unplaced Scaffold NW_005353663.1 (824451..883623, complement)

NW_005353663.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 24 Neighboring gene uncharacterized LOC106726584 Neighboring gene signal recognition particle 9 kDa protein-like Neighboring gene synuclein alpha interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005353663.1 Unplaced Scaffold Reference ASM41265v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii. Seim I, et al. Nat Commun, 2013. PMID 23962925, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in early endosome to Golgi transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of retromer complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-2
Names
Sorting nexin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis brandtii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM41265v1

Genomic

  1. NW_005353663.1 Reference ASM41265v1

    Range
    824451..883623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005857121.2 → XP_005857183.2  sorting nexin-2 isoform X2

    UniProtKB/TrEMBL
    S7P374
    Conserved Domains (4) summary
    cd07282
    Location:125 → 248
    PX_SNX2; The phosphoinositide binding Phox Homology domain of Sorting Nexin 2
    cd07664
    Location:266 → 499
    BAR_SNX2; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2
    COG5391
    Location:18 → 492
    COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
    pfam03700
    Location:18 → 95
    Sorting_nexin; Sorting nexin, N-terminal domain

  2. XM_005857120.2 → XP_005857182.2  sorting nexin-2 isoform X1

    UniProtKB/TrEMBL
    S7P374
    Conserved Domains (4) summary
    cd07282
    Location:125 → 248
    PX_SNX2; The phosphoinositide binding Phox Homology domain of Sorting Nexin 2
    COG5391
    Location:18 → 496
    COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
    pfam03700
    Location:18 → 95
    Sorting_nexin; Sorting nexin, N-terminal domain
    cl12013
    Location:266 → 503
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
Nucleotide Protein
Heading Accession and Version

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