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hdac9b histone deacetylase 9b [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102222620, updated on 10-Mar-2024

Summary

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Gene symbol
hdac9b
Gene description
histone deacetylase 9b
See related
Ensembl:ENSXMAG00000013839
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
hdac9
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 3 NC_036445.1 (14995501..15020291, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372299.1 (47377..71406, complement)

Chromosome 3 - NC_036445.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111608071 Neighboring gene twist family bHLH transcription factor 1b Neighboring gene ankyrin repeat domain 28b Neighboring gene 2-hydroxyacyl-CoA lyase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036445.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    14995501..15020291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005804629.2 → XP_005804686.1  histone deacetylase 9 isoform X3

    UniProtKB/TrEMBL
    A0A3B5QZF5
    Conserved Domains (1) summary
    cd10163
    Location:67 → 164
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

  2. XM_014470842.2 → XP_014326328.1  histone deacetylase 9 isoform X1

    UniProtKB/TrEMBL
    A0A3B5QZF5, M4AHC6
    Related
    ENSXMAP00000013870.1, ENSXMAT00000013887.2
    Conserved Domains (1) summary
    cd10163
    Location:67 → 164
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

  3. XM_023331072.1 → XP_023186840.1  histone deacetylase 9 isoform X2

    UniProtKB/TrEMBL
    A0A3B5QZF5
    Related
    ENSXMAP00000036322.1, ENSXMAT00000037285.1
    Conserved Domains (1) summary
    pfam12203
    Location:66 → 164
    HDAC4_Gln; Glutamine rich N terminal domain of histone deacetylase 4
Nucleotide Protein Strain
Heading Accession and Version

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