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pcdh19 protocadherin 19 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102220877, updated on 10-Mar-2024

Summary

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Gene symbol
pcdh19
Gene description
protocadherin 19
See related
Ensembl:ENSXMAG00000018526
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 23
Exon count:
5
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 23 NC_036465.1 (9496307..9580480)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372329.1 (577624..622265)

Chromosome 23 - NC_036465.1Genomic Context describing neighboring genes Neighboring gene E74-like ETS transcription factor 1 Neighboring gene tenomodulin Neighboring gene diaphanous-related formin 2 Neighboring gene uncharacterized LOC111606890

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036465.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    9496307..9580480
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023328629.1 → XP_023184397.1  protocadherin-19 isoform X1

    Conserved Domains (2) summary
    cd11304
    Location:238 → 338
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:23 → 102
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  2. XM_023328630.1 → XP_023184398.1  protocadherin-19 isoform X2

    UniProtKB/TrEMBL
    M4AVR4
    Related
    ENSXMAP00000018559.2, ENSXMAT00000018587.2
    Conserved Domains (2) summary
    cd11304
    Location:238 → 338
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:23 → 102
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  3. XM_023328633.1 → XP_023184401.1  protocadherin-19 isoform X5

    Conserved Domains (2) summary
    cd11304
    Location:238 → 338
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:23 → 102
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  4. XM_023328634.1 → XP_023184402.1  protocadherin-19 isoform X6

    Conserved Domains (2) summary
    cd11304
    Location:238 → 338
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:23 → 102
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  5. XM_023328631.1 → XP_023184399.1  protocadherin-19 isoform X3

    Conserved Domains (2) summary
    cd11304
    Location:238 → 338
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:23 → 102
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  6. XM_023328632.1 → XP_023184400.1  protocadherin-19 isoform X4

    Conserved Domains (2) summary
    cd11304
    Location:238 → 338
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:23 → 102
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  7. XM_023328635.1 → XP_023184403.1  protocadherin-19 isoform X7

    Conserved Domains (2) summary
    cd11304
    Location:238 → 338
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:23 → 102
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein Strain
Heading Accession and Version

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