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adamtsl3 ADAMTS-like 3 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102217668, updated on 12-Sep-2024

Summary

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Gene symbol
adamtsl3
Gene description
ADAMTS-like 3
See related
Ensembl:ENSXMAG00000008488
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
adamtsl1
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 14
Exon count:
28
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 14 NC_036456.1 (16895677..17000418, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372217.1 (445875..510748, complement)

Chromosome 14 - NC_036456.1Genomic Context describing neighboring genes Neighboring gene NACHT, LRR and PYD domains-containing protein 12-like Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene La ribonucleoprotein 7, transcriptional regulator Neighboring gene uncharacterized LOC111611004 Neighboring gene uncharacterized LOC111611005 Neighboring gene perilipin 2 Neighboring gene cell division cycle associated 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADAMTS-like protein 1
Names
ADAMTS like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036456.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    16895677..17000418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023346503.1 → XP_023202271.1  ADAMTS-like protein 1 isoform X1

    UniProtKB/TrEMBL
    M4A215
    Conserved Domains (5) summary
    smart00408
    Location:924 → 983
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:74 → 120
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:224 → 334
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1487 → 1517
    PLAC; PLAC (protease and lacunin) domain
    cl28434
    Location:1160 → 1256
    I-set; Immunoglobulin I-set domain

  2. XM_023346504.1 → XP_023202272.1  ADAMTS-like protein 1 isoform X2

    Conserved Domains (5) summary
    smart00408
    Location:924 → 983
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:74 → 120
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:224 → 334
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1486 → 1516
    PLAC; PLAC (protease and lacunin) domain
    cl28434
    Location:1160 → 1256
    I-set; Immunoglobulin I-set domain

  3. XM_014468954.2 → XP_014324440.2  ADAMTS-like protein 1 isoform X1

    UniProtKB/TrEMBL
    M4A215
    Related
    ENSXMAP00000008509.2, ENSXMAT00000008522.2
    Conserved Domains (5) summary
    smart00408
    Location:924 → 983
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:74 → 120
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:224 → 334
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1487 → 1517
    PLAC; PLAC (protease and lacunin) domain
    cl28434
    Location:1160 → 1256
    I-set; Immunoglobulin I-set domain

  4. XM_023346505.1 → XP_023202273.1  ADAMTS-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3B5PUM1
    Related
    ENSXMAP00000022262.1, ENSXMAT00000042479.1
    Conserved Domains (5) summary
    smart00408
    Location:881 → 940
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:31 → 77
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:181 → 291
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1444 → 1474
    PLAC; PLAC (protease and lacunin) domain
    cl28434
    Location:1117 → 1213
    I-set; Immunoglobulin I-set domain

  5. XM_023346506.1 → XP_023202274.1  ADAMTS-like protein 1 isoform X4

    Conserved Domains (4) summary
    smart00408
    Location:647 → 706
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:490 → 547
    TSP1; Thrombospondin type 1 repeats
    pfam08686
    Location:1210 → 1240
    PLAC; PLAC (protease and lacunin) domain
    cl28434
    Location:883 → 979
    I-set; Immunoglobulin I-set domain
Nucleotide Protein Strain
Heading Accession and Version

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