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dcp1a decapping mRNA 1A [ Pundamilia nyererei ]

Gene ID: 102197568, updated on 10-Mar-2024

Summary

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Gene symbol
dcp1a
Gene description
decapping mRNA 1A
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187440.1 (26436..37225, complement)

NW_005187440.1Genomic Context describing neighboring genes Neighboring gene uncharacterized oxidoreductase At1g06690, chloroplastic-like Neighboring gene transketolase Neighboring gene voltage-dependent L-type calcium channel subunit alpha-1D-like Neighboring gene voltage-dependent L-type calcium channel subunit alpha-1D-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187440.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enzyme activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mRNA-decapping enzyme 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187440.1 Reference PunNye1.0

    Range
    26436..37225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005730679.1 → XP_005730736.1  mRNA-decapping enzyme 1A isoform X2

    UniProtKB/TrEMBL
    A0A9Y3VIG4
    Conserved Domains (2) summary
    cd09804
    Location:10 → 125
    Dcp1; mRNA decapping enzyme 1 (Dcp1)
    pfam16741
    Location:457 → 498
    mRNA_decap_C; mRNA-decapping enzyme C-terminus

  2. XM_005730678.1 → XP_005730735.1  mRNA-decapping enzyme 1A isoform X1

    UniProtKB/TrEMBL
    A0A9Y3VI37
    Conserved Domains (2) summary
    cd09804
    Location:10 → 125
    Dcp1; mRNA decapping enzyme 1 (Dcp1)
    pfam16741
    Location:458 → 499
    mRNA_decap_C; mRNA-decapping enzyme C-terminus
Nucleotide Protein
Heading Accession and Version

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