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SMG9 SMG9 nonsense mediated mRNA decay factor [ Capra hircus (goat) ]

Gene ID: 102187427, updated on 10-Mar-2024

Summary

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Gene symbol
SMG9
Gene description
SMG9 nonsense mediated mRNA decay factor
See related
EnsemblRapid:ENSCHIG00000022222
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
14
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 18 NC_030825.1 (53009717..53030071, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 18 NC_022310.1 (50748584..50768733, complement)

Chromosome 18 - NC_030825.1Genomic Context describing neighboring genes Neighboring gene interferon-inducible GTPase 5 Neighboring gene immunity related GTPase cinema Neighboring gene potassium calcium-activated channel subfamily N member 4 Neighboring gene LY6/PLAUR domain containing 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SMG9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030825.1 Reference ASM170441v1 Primary Assembly

    Range
    53009717..53030071 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005692616.3 → XP_005692673.1  protein SMG9 isoform X1

    See identical proteins and their annotated locations for XP_005692673.1

    UniProtKB/TrEMBL
    A0A452FM24, A0A8C2RE51
    Related
    ENSCHIP00000049289.1, ENSCHIT00000062846.1

  2. XM_018062539.1 → XP_017918028.1  protein SMG9 isoform X2

    UniProtKB/TrEMBL
    A0A8C2RE51
    Related
    ENSCHIP00000025456.2, ENSCHIT00000033318.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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