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PEX1 peroxisomal biogenesis factor 1 [ Pseudopodoces humilis (Tibetan ground-tit) ]

Gene ID: 102114099, updated on 3-Aug-2024

Summary

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Gene symbol
PEX1
Gene description
peroxisomal biogenesis factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudopodoces humilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Pseudopodoces
Orthologs
human mouse all
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Genomic context

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See PEX1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
101 current PseHum1.0 (GCF_000331425.1) Unplaced Scaffold NW_005087558.1 (10653284..10678668, complement)

NW_005087558.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and IBR domain containing 1 Neighboring gene GATA zinc finger domain containing 1 Neighboring gene RNA binding motif protein 48 Neighboring gene calaxin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005087558.1 Unplaced Scaffold Reference PseHum1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into peroxisome matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome biogenesis factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudopodoces humilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PseHum1.0 Primary Assembly

Genomic

  1. NW_005087558.1 Reference PseHum1.0 Primary Assembly

    Range
    10653284..10678668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014248791.1 → XP_014104266.1  peroxisome biogenesis factor 1 isoform X1

    Conserved Domains (4) summary
    COG0464
    Location:600 → 1076
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    pfam00004
    Location:884 → 1013
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09262
    Location:100 → 175
    PEX-1N; Peroxisome biogenesis factor 1, N-terminal
    pfam09263
    Location:15 → 94
    PEX-2N; Peroxisome biogenesis factor 1, N-terminal

  2. XM_005518796.2 → XP_005518853.1  peroxisome biogenesis factor 1 isoform X2

    Conserved Domains (4) summary
    COG0464
    Location:600 → 1075
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    pfam00004
    Location:883 → 1012
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09262
    Location:100 → 175
    PEX-1N; Peroxisome biogenesis factor 1, N-terminal
    pfam09263
    Location:15 → 94
    PEX-2N; Peroxisome biogenesis factor 1, N-terminal
Nucleotide Protein
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