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LIMS1 LIM zinc finger domain containing 1 [ Pseudopodoces humilis (Tibetan ground-tit) ]

Gene ID: 102109640, updated on 3-Aug-2024

Summary

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Gene symbol
LIMS1
Gene description
LIM zinc finger domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudopodoces humilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Pseudopodoces
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current PseHum1.0 (GCF_000331425.1) Unplaced Scaffold NW_005087554.1 (58109601..58150115)

NW_005087554.1Genomic Context describing neighboring genes Neighboring gene sulfotransferase 1C1-like Neighboring gene GRIP and coiled-coil domain containing 2 Neighboring gene uncharacterized LOC106628098 Neighboring gene RAN binding protein 2 Neighboring gene coiled-coil domain containing 138

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005087554.1 Unplaced Scaffold Reference PseHum1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM and senescent cell antigen-like-containing domain protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudopodoces humilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PseHum1.0 Primary Assembly

Genomic

  1. NW_005087554.1 Reference PseHum1.0 Primary Assembly

    Range
    58109601..58150115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014250938.1 → XP_014106413.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X4

    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  2. XM_014250930.1 → XP_014106405.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  3. XM_014250935.1 → XP_014106410.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  4. XM_005516569.2 → XP_005516626.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X1

    Conserved Domains (5) summary
    cd09331
    Location:72 → 130
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:133 → 184
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:197 → 247
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:253 → 306
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:314 → 367
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  5. XM_005516570.2 → XP_005516627.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X2

    Conserved Domains (5) summary
    cd09331
    Location:72 → 130
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:133 → 184
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:197 → 247
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:253 → 306
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:314 → 367
    LIM5_PINCH; The fifth LIM domain of protein PINCH
Nucleotide Protein
Heading Accession and Version

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