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PLXNA1 plexin A1 [ Pseudopodoces humilis (Tibetan ground-tit) ]

Gene ID: 102109594, updated on 3-Aug-2024

Summary

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Gene symbol
PLXNA1
Gene description
plexin A1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudopodoces humilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Pseudopodoces
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
101 current PseHum1.0 (GCF_000331425.1) Unplaced Scaffold NW_005087566.1 (10707031..10822468, complement)

NW_005087566.1Genomic Context describing neighboring genes Neighboring gene thioredoxin reductase 3 Neighboring gene transfer RNA leucine (anticodon UAA) Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 6 Neighboring gene transmembrane protein adipocyte associated 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005087566.1 Unplaced Scaffold Reference PseHum1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of semaphorin receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plexin-A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudopodoces humilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PseHum1.0 Primary Assembly

Genomic

  1. NW_005087566.1 Reference PseHum1.0 Primary Assembly

    Range
    10707031..10822468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005522067.2 → XP_005522124.1  plexin-A1

    Conserved Domains (9) summary
    cd11271
    Location:43 → 516
    Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1
    cd01179
    Location:963 → 1048
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:866 → 962
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1050 → 1150
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:517 → 565
    PSI; Plexin repeat
    pfam01833
    Location:1152 → 1236
    TIG; IPT/TIG domain
    pfam08337
    Location:1320 → 1868
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:572 → 662
    TIG_plexin; TIG domain
    pfam18020
    Location:716 → 810
    TIG_2; TIG domain found in plexin

  2. XM_014251664.1 → XP_014107139.1  plexin-A1

    Conserved Domains (9) summary
    cd11271
    Location:43 → 516
    Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1
    cd01179
    Location:963 → 1048
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:866 → 962
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1050 → 1150
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:517 → 565
    PSI; Plexin repeat
    pfam01833
    Location:1152 → 1236
    TIG; IPT/TIG domain
    pfam08337
    Location:1320 → 1868
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:572 → 662
    TIG_plexin; TIG domain
    pfam18020
    Location:716 → 810
    TIG_2; TIG domain found in plexin
Nucleotide Protein
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