U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

OPN1SW opsin 1, short wave sensitive [ Pseudopodoces humilis (Tibetan ground-tit) ]

Gene ID: 102108366, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
OPN1SW
Gene description
opsin 1, short wave sensitive
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudopodoces humilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Pseudopodoces
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current PseHum1.0 (GCF_000331425.1) Unplaced Scaffold NW_005087738.1 (193451..196350)

NW_005087738.1Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting V1 subunit F Neighboring gene filamin C Neighboring gene calumenin Neighboring gene translation initiation factor IF-2-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005087738.1 Unplaced Scaffold Reference PseHum1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phototransduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor outer segment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
short-wave-sensitive opsin 1
Names
opsin 1 (cone pigments), short-wave-sensitive

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pseudopodoces humilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PseHum1.0 Primary Assembly

Genomic

  1. NW_005087738.1 Reference PseHum1.0 Primary Assembly

    Range
    193451..196350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005533413.1 → XP_005533470.1  short-wave-sensitive opsin 1

    Conserved Domains (2) summary
    pfam00001
    Location:49 → 300
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:45 → 242
    7tm_4; Olfactory receptor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.