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SHROOM4 shroom family member 4 [ Pseudopodoces humilis (Tibetan ground-tit) ]

Gene ID: 102102953, updated on 3-Aug-2024

Summary

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Gene symbol
SHROOM4
Gene description
shroom family member 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudopodoces humilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Pseudopodoces
Orthologs
human mouse all
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Genomic context

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See SHROOM4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current PseHum1.0 (GCF_000331425.1) Unplaced Scaffold NW_005087591.1 (125967..138012)

NW_005087591.1Genomic Context describing neighboring genes Neighboring gene phosphorylase kinase regulatory subunit alpha 1 Neighboring gene bone morphogenetic protein 15 Neighboring gene diacylglycerol kinase kappa Neighboring gene cyclin B3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005087591.1 Unplaced Scaffold Reference PseHum1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cortical actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Shroom4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudopodoces humilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PseHum1.0 Primary Assembly

Genomic

  1. NW_005087591.1 Reference PseHum1.0 Primary Assembly

    Range
    125967..138012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014256530.1 → XP_014112005.1  protein Shroom4

    Conserved Domains (2) summary
    cd00992
    Location:14 → 92
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam08687
    Location:1090 → 1383
    ASD2; Apx/Shroom domain ASD2
Nucleotide Protein
Heading Accession and Version

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