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TUB TUB bipartite transcription factor [ Columba livia (rock pigeon) ]

Gene ID: 102098575, updated on 3-Aug-2024

Summary

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Gene symbol
TUB
Gene description
TUB bipartite transcription factor
Locus tag
A306_03111
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 5 NC_088606.1 (56327654..56479067)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973198.1 (5069395..5218938)

Chromosome 5 - NC_088606.1Genomic Context describing neighboring genes Neighboring gene COPI coat complex subunit beta 1 Neighboring gene RAS related 2 Neighboring gene uncharacterized LOC110365789 Neighboring gene uncharacterized LOC110365782 Neighboring gene RIC3 acetylcholine receptor chaperone Neighboring gene LIM domain only 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein localization to cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubby protein homolog
Names
Tubby protein like protein
tubby bipartite transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088606.1 Reference bColLiv1.pat.W.v2

    Range
    56327654..56479067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065065285.1 → XP_064921357.1  tubby protein homolog isoform X5

  2. XM_021300311.2 → XP_021155986.1  tubby protein homolog isoform X1

    Conserved Domains (2) summary
    pfam01167
    Location:284 → 524
    Tub; Tub family
    pfam16322
    Location:35 → 265
    Tub_N; Tubby N-terminal

  3. XM_013369868.3 → XP_013225322.1  tubby protein homolog isoform X2

    UniProtKB/TrEMBL
    A0A2I0MHU6
    Conserved Domains (2) summary
    pfam01167
    Location:283 → 523
    Tub; Tub family
    pfam16322
    Location:35 → 264
    Tub_N; Tubby N-terminal

  4. XM_021300316.2 → XP_021155991.1  tubby protein homolog isoform X6

    Conserved Domains (2) summary
    pfam01167
    Location:259 → 499
    Tub; Tub family
    pfam16322
    Location:35 → 240
    Tub_N; Tubby N-terminal

  5. XM_065065287.1 → XP_064921359.1  tubby protein homolog isoform X8

  6. XM_021300317.2 → XP_021155992.1  tubby protein homolog isoform X10

    Conserved Domains (2) summary
    pfam01167
    Location:214 → 454
    Tub; Tub family
    pfam16322
    Location:35 → 195
    Tub_N; Tubby N-terminal

  7. XM_065065283.1 → XP_064921355.1  tubby protein homolog isoform X3

  8. XM_065065284.1 → XP_064921356.1  tubby protein homolog isoform X4

  9. XM_065065286.1 → XP_064921358.1  tubby protein homolog isoform X7

  10. XM_065065288.1 → XP_064921360.1  tubby protein homolog isoform X9

  11. XM_065065289.1 → XP_064921361.1  tubby protein homolog isoform X11

Nucleotide Protein
Heading Accession and Version

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