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BBX BBX high mobility group box domain containing [ Columba livia (rock pigeon) ]

Gene ID: 102097776, updated on 3-Aug-2024

Summary

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Gene symbol
BBX
Gene description
BBX high mobility group box domain containing
Locus tag
A306_10395
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 1 NC_088602.1 (69841093..69989540, complement)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973624.1 (1586761..1730458)

Chromosome 1 - NC_088602.1Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 57 Neighboring gene CD47 molecule Neighboring gene uncharacterized LOC135578305 Neighboring gene uncharacterized LOC110364732 Neighboring gene uncharacterized LOC110364727

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HMG box transcription factor BBX
Names
BBX, HMG-box containing

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088602.1 Reference bColLiv1.pat.W.v2

    Range
    69841093..69989540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065049873.1 → XP_064905945.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  2. XM_065049862.1 → XP_064905934.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  3. XM_065049853.1 → XP_064905925.1  HMG box transcription factor BBX isoform X6

    UniProtKB/TrEMBL
    A0A2I0MSW3

  4. XM_065049866.1 → XP_064905938.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  5. XM_065049860.1 → XP_064905932.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  6. XM_065049851.1 → XP_064905923.1  HMG box transcription factor BBX isoform X6

    UniProtKB/TrEMBL
    A0A2I0MSW3

  7. XM_065049863.1 → XP_064905935.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  8. XM_065049852.1 → XP_064905924.1  HMG box transcription factor BBX isoform X6

    UniProtKB/TrEMBL
    A0A2I0MSW3

  9. XM_065049870.1 → XP_064905942.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  10. XM_065049864.1 → XP_064905936.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  11. XM_065049856.1 → XP_064905928.1  HMG box transcription factor BBX isoform X6

    UniProtKB/TrEMBL
    A0A2I0MSW3

  12. XM_065049869.1 → XP_064905941.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  13. XM_065049865.1 → XP_064905937.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  14. XM_065049850.1 → XP_064905922.1  HMG box transcription factor BBX isoform X5

    UniProtKB/TrEMBL
    A0A2I0MSW3

  15. XM_065049872.1 → XP_064905944.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  16. XM_065049859.1 → XP_064905931.1  HMG box transcription factor BBX isoform X6

    UniProtKB/TrEMBL
    A0A2I0MSW3

  17. XM_065049847.1 → XP_064905919.1  HMG box transcription factor BBX isoform X2

    UniProtKB/TrEMBL
    A0A2I0MSW9

  18. XM_065049846.1 → XP_064905918.1  HMG box transcription factor BBX isoform X1

    UniProtKB/TrEMBL
    A0A2I0MSW3

  19. XM_065049849.1 → XP_064905921.1  HMG box transcription factor BBX isoform X4

    UniProtKB/TrEMBL
    A0A2I0MSW4

  20. XM_065049848.1 → XP_064905920.1  HMG box transcription factor BBX isoform X3

    UniProtKB/TrEMBL
    A0A2I0MSW4

  21. XM_065049875.1 → XP_064905947.1  HMG box transcription factor BBX isoform X8

    UniProtKB/TrEMBL
    A0A2I0MSW4

  22. XM_065049874.1 → XP_064905946.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  23. XM_065049861.1 → XP_064905933.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  24. XM_065049857.1 → XP_064905929.1  HMG box transcription factor BBX isoform X6

    UniProtKB/TrEMBL
    A0A2I0MSW3

  25. XM_065049868.1 → XP_064905940.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  26. XM_065049858.1 → XP_064905930.1  HMG box transcription factor BBX isoform X6

    UniProtKB/TrEMBL
    A0A2I0MSW3

  27. XM_065049854.1 → XP_064905926.1  HMG box transcription factor BBX isoform X6

    UniProtKB/TrEMBL
    A0A2I0MSW3

  28. XM_065049867.1 → XP_064905939.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  29. XM_013369722.3 → XP_013225176.2  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A2I0MSW3

  30. XM_021298463.2 → XP_021154138.2  HMG box transcription factor BBX isoform X9

    UniProtKB/TrEMBL
    A0A2I0MSW3
Nucleotide Protein
Heading Accession and Version

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