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PRPF18 pre-mRNA processing factor 18 [ Columba livia (rock pigeon) ]

Gene ID: 102087177, updated on 3-Aug-2024

Summary

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Gene symbol
PRPF18
Gene description
pre-mRNA processing factor 18
Locus tag
A306_09902
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 1 NC_088602.1 (204353799..204371081, complement)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973614.1 (819306..834223)

Chromosome 1 - NC_088602.1Genomic Context describing neighboring genes Neighboring gene FERM domain containing 4A Neighboring gene uncharacterized LOC110364591 Neighboring gene uncharacterized LOC135578243 Neighboring gene uncharacterized LOC110364594 Neighboring gene BEN domain containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in generation of catalytic spliceosome for second transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type post-spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor 18
Names
Pre-mRNA-splicing factor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088602.1 Reference bColLiv1.pat.W.v2

    Range
    204353799..204371081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065049263.1 → XP_064905335.1  pre-mRNA-splicing factor 18 isoform X2

  2. XM_065049261.1 → XP_064905333.1  pre-mRNA-splicing factor 18 isoform X1

  3. XM_065049264.1 → XP_064905336.1  pre-mRNA-splicing factor 18 isoform X3

  4. XM_065049265.1 → XP_064905337.1  pre-mRNA-splicing factor 18 isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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