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tmem108 transmembrane protein 108 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 102077840, updated on 10-Mar-2024

Summary

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Gene symbol
tmem108
Gene description
transmembrane protein 108
See related
Ensembl:ENSONIG00000006265
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in heart (RPKM 18.1), eye (RPKM 14.6) and 5 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG9
Exon count:
6
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG9 NC_031974.2 (14204177..14262842)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG9 NC_031974.1 (12526132..12584907)

Linkage Group LG9 - NC_031974.2Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C13 Neighboring gene DNA topoisomerase II binding protein 1 Neighboring gene uncharacterized LOC100694740 Neighboring gene uncharacterized LOC102077553 Neighboring gene uncharacterized LOC109203551 Neighboring gene carnitine deficiency-associated gene expressed in ventricle 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in dendrite extension IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in postsynaptic density organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde axonal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 108

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031974.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    14204177..14262842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005449009.4 → XP_005449066.1  transmembrane protein 108 isoform X2

    UniProtKB/TrEMBL
    I3JGA1
    Related
    ENSONIP00000007892.2, ENSONIT00000007897.2
    Conserved Domains (1) summary
    pfam15759
    Location:289 → 508
    TMEM108; TMEM108 family

  2. XM_025910194.1 → XP_025765979.1  transmembrane protein 108 isoform X1

    UniProtKB/TrEMBL
    I3JGA1
    Conserved Domains (1) summary
    pfam15759
    Location:375 → 594
    TMEM108; TMEM108 family
Nucleotide Protein
Heading Accession and Version

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