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hps6 HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 102076048, updated on 10-Mar-2024

Summary

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Gene symbol
hps6
Gene description
HPS6 biogenesis of lysosomal organelles complex 2 subunit 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
human zebrafish all
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Genomic context

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See hps6 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
1
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG13 NC_031978.2 (18801920..18807707)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG13 NC_031978.1 (10883969..10890127)

Linkage Group LG13 - NC_031978.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112842051 Neighboring gene uncharacterized LOC109204711 Neighboring gene prominin 2 Neighboring gene LIM domain binding 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lysosome localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in melanocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in organelle organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BLOC-2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Hermansky-Pudlak syndrome 6 protein
Names
Hermansky-Pudlak syndrome 6 protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031978.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    18801920..18807707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005474158.4 → XP_005474215.1  Hermansky-Pudlak syndrome 6 protein

    UniProtKB/TrEMBL
    A0A669B4X3
    Conserved Domains (1) summary
    pfam15702
    Location:1 → 868
    HPS6; Hermansky-Pudlak syndrome 6 protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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