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AMIGO2 adhesion molecule with Ig like domain 2 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102072232, updated on 3-Aug-2024

Summary

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Gene symbol
AMIGO2
Gene description
adhesion molecule with Ig like domain 2
See related
Ensembl:ENSZALG00000009735
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See AMIGO2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081539.1 (2940855..2950397, complement)

NW_005081539.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 38 member 2 Neighboring gene solute carrier family 38 member 4 Neighboring gene uncharacterized LOC113460374 Neighboring gene uncharacterized LOC113460337

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081539 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amphoterin-induced protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081539.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    2940855..2950397 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005480541.3 → XP_005480598.1  amphoterin-induced protein 2

    UniProtKB/TrEMBL
    A0A8D2MSK4
    Related
    ENSZALP00000011546.1, ENSZALT00000015946.1
    Conserved Domains (5) summary
    smart00410
    Location:299 → 379
    IG_like; Immunoglobulin like
    sd00033
    Location:72 → 93
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:92 → 131
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:93 → 176
    LRR_8; Leucine rich repeat
    cl11960
    Location:322 → 379
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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