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SYNE3 spectrin repeat containing nuclear envelope family member 3 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102069508, updated on 3-Aug-2024

Summary

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Gene symbol
SYNE3
Gene description
spectrin repeat containing nuclear envelope family member 3
See related
Ensembl:ENSZALG00000003804
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See SYNE3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081549.1 (5122957..5190105, complement)

NW_005081549.1Genomic Context describing neighboring genes Neighboring gene dicer 1, ribonuclease III Neighboring gene calmin Neighboring gene small Cajal body-specific RNA 13 Neighboring gene glutaredoxin 5 Neighboring gene uncharacterized LOC102069867

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081549 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of meiotic nuclear membrane microtubule tethering complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nesprin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081549.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    5122957..5190105 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026791134.1 → XP_026646935.1  nesprin-3 isoform X3

    UniProtKB/TrEMBL
    A0A8D2M9J8
    Related
    ENSZALP00000003963.1, ENSZALT00000006098.1

  2. XM_026791132.1 → XP_026646933.1  nesprin-3 isoform X3

    UniProtKB/TrEMBL
    A0A8D2M9J8
    Conserved Domains (2) summary
    pfam10541
    Location:933 → 959
    KASH; Nuclear envelope localization domain
    cl25732
    Location:200 → 737
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_014264482.2 → XP_014119957.2  nesprin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8D2M981, A0A8D2M9J8
    Related
    ENSZALP00000003960.1, ENSZALT00000006093.1

  4. XM_005483191.3 → XP_005483248.2  nesprin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8D2M912, A0A8D2M9J8
    Related
    ENSZALP00000003956.1, ENSZALT00000006089.1
Nucleotide Protein
Heading Accession and Version

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