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ECM2 extracellular matrix protein 2 [ Falco cherrug (Saker falcon) ]

Gene ID: 102054813, updated on 3-Aug-2024

Summary

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Gene symbol
ECM2
Gene description
extracellular matrix protein 2
See related
EnsemblRapid:ENSFCHG00000012015
Gene type
protein coding
RefSeq status
MODEL
Organism
Falco cherrug
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Falconiformes; Falconidae; Falco
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_04 current bFalChe1.pri (GCF_023634085.1) 4 NC_073700.1 (1709439..1730431, complement)
102 previous assembly F_cherrug_v1.0 (GCF_000337975.1) Unplaced Scaffold NW_004994882.1 (2536329..2557618)

Chromosome 4 - NC_073700.1Genomic Context describing neighboring genes Neighboring gene centromere protein P Neighboring gene osteomodulin Neighboring gene asporin Neighboring gene inositol-pentakisphosphate 2-kinase Neighboring gene uncharacterized LOC129735922 Neighboring gene protein BTG1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables collagen V binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell-substrate adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
extracellular matrix protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023634085.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bFalChe1.pri Primary Assembly

Genomic

  1. NC_073700.1 Reference bFalChe1.pri Primary Assembly

    Range
    1709439..1730431 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005444426.4 → XP_005444483.1  extracellular matrix protein 2

    Conserved Domains (4) summary
    sd00031
    Location:533 → 553
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:319 → 342
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00093
    Location:104 → 158
    VWC; von Willebrand factor type C domain
    NF033189
    Location:299 → 632
    internalin_A; class 1 internalin InlA

  2. XM_027812949.2 → XP_027668750.1  extracellular matrix protein 2

    Related
    ENSFCHP00000019458.1
    Conserved Domains (4) summary
    sd00031
    Location:533 → 553
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:319 → 342
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00093
    Location:104 → 158
    VWC; von Willebrand factor type C domain
    NF033189
    Location:299 → 632
    internalin_A; class 1 internalin InlA
Nucleotide Protein
Heading Accession and Version

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