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GMPPB GDP-mannose pyrophosphorylase B [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102041221, updated on 3-Aug-2024

Summary

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Gene symbol
GMPPB
Gene description
GDP-mannose pyrophosphorylase B
See related
Ensembl:ENSGFOG00000008187
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054339.1 (267819..272690, complement)

NW_005054339.1Genomic Context describing neighboring genes Neighboring gene shisa family member 5 Neighboring gene ring finger protein 123 Neighboring gene inositol hexakisphosphate kinase 1 Neighboring gene cadherin related family member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054339 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannose-1-phosphate guanylyltransferase (GTP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GDP-mannose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell wall mannoprotein biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: mannose-1-phosphate guanyltransferase beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054339.1 Reference GeoFor_1.0

    Range
    267819..272690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005422481.3 → XP_005422538.3  LOW QUALITY PROTEIN: mannose-1-phosphate guanyltransferase beta

    UniProtKB/TrEMBL
    A0A6I9HJ58
    Related
    ENSGFOP00000011797.1, ENSGFOT00000012202.1
    Conserved Domains (2) summary
    cl00160
    Location:215 → 294
    LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...
    cl11394
    Location:45 → 193
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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