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GOPC golgi associated PDZ and coiled-coil motif containing [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102038040, updated on 3-Aug-2024

Summary

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Gene symbol
GOPC
Gene description
golgi associated PDZ and coiled-coil motif containing
See related
Ensembl:ENSGFOG00000007881
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054306.1 (6969415..6983041, complement)

NW_005054306.1Genomic Context describing neighboring genes Neighboring gene ROS proto-oncogene 1, receptor tyrosine kinase Neighboring gene discoidin, CUB and LCCL domain containing 1 Neighboring gene nephrocan-like Neighboring gene NUS1 dehydrodolichyl diphosphate synthase subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054306 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of protein localization to cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Golgi-associated PDZ and coiled-coil motif-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054306.1 Reference GeoFor_1.0

    Range
    6969415..6983041 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031066668.1 → XP_030922528.1  Golgi-associated PDZ and coiled-coil motif-containing protein

    UniProtKB/TrEMBL
    A0A8N5F3N3
    Related
    ENSGFOP00000011389.1, ENSGFOT00000011773.1
    Conserved Domains (2) summary
    COG3975
    Location:9 → 215
    COG3975; Predicted metalloprotease, contains C-terminal PDZ domain [General function prediction only]
    cd00992
    Location:129 → 211
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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