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Ccdc40 coiled-coil domain 40 molecular ruler complex subunit [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102023827, updated on 10-Mar-2024

Summary

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Gene symbol
Ccdc40
Gene description
coiled-coil domain 40 molecular ruler complex subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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See Ccdc40 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955506.1 (2783837..2840248, complement)

NW_004955506.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4A3 Neighboring gene uncharacterized LOC106146940 Neighboring gene alpha glucosidase Neighboring gene TBC1 domain family member 16 Neighboring gene uncharacterized LOC102021581 Neighboring gene chromobox 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955506.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axoneme assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in epithelial cilium movement involved in determination of left/right asymmetry IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart looping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil domain-containing protein 40
Names
coiled-coil domain containing 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955506.1 Reference ChiLan1.0 Primary Assembly

    Range
    2783837..2840248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005407506.2 → XP_005407563.2  coiled-coil domain-containing protein 40 isoform X1

    UniProtKB/TrEMBL
    A0A8C2V0J3
    Conserved Domains (2) summary
    TIGR02168
    Location:318 → 1043
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam08647
    Location:763 → 861
    BRE1; BRE1 E3 ubiquitin ligase

  2. XM_013505994.1 → XP_013361448.1  coiled-coil domain-containing protein 40 isoform X2

    UniProtKB/TrEMBL
    A0A8C2V0J3
    Conserved Domains (2) summary
    TIGR02168
    Location:317 → 1042
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam08647
    Location:762 → 860
    BRE1; BRE1 E3 ubiquitin ligase
Nucleotide Protein
Heading Accession and Version

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