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Pml PML nuclear body scaffold [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102020735, updated on 10-Mar-2024

Summary

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Gene symbol
Pml
Gene description
PML nuclear body scaffold
See related
Ensembl:ENSCLAG00000011948
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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See Pml in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955450.1 (3654854..3692057, complement)

NW_004955450.1Genomic Context describing neighboring genes Neighboring gene immunoglobulin superfamily containing leucine rich repeat Neighboring gene uncharacterized LOC102018787 Neighboring gene immunoglobulin superfamily containing leucine rich repeat 2 Neighboring gene U6 snRNA-associated Sm-like protein LSm5 pseudogene Neighboring gene stomatin like 1 Neighboring gene lysyl oxidase like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955450.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in PML body organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intrinsic apoptotic signaling pathway in response to DNA damage IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in PML body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein PML
Names
promyelocytic leukemia

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955450.1 Reference ChiLan1.0 Primary Assembly

    Range
    3654854..3692057 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013518919.1 → XP_013374373.1  protein PML isoform X2

    Conserved Domains (5) summary
    smart00336
    Location:128 → 165
    BBOX; B-Box-type zinc finger
    pfam09420
    Location:255 → 313
    Nop16; Ribosome biogenesis protein Nop16
    pfam12126
    Location:239 → 520
    DUF3583; Protein of unknown function (DUF3583)
    pfam13923
    Location:57 → 91
    zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
    cl10012
    Location:568 → 707
    DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily

  2. XM_013518918.1 → XP_013374372.1  protein PML isoform X1

    UniProtKB/TrEMBL
    A0A8C2VTS0
    Related
    ENSCLAP00000017395.1, ENSCLAT00000017565.1
    Conserved Domains (5) summary
    smart00336
    Location:128 → 165
    BBOX; B-Box-type zinc finger
    pfam09420
    Location:255 → 313
    Nop16; Ribosome biogenesis protein Nop16
    pfam12126
    Location:239 → 566
    DUF3583; Protein of unknown function (DUF3583)
    pfam13923
    Location:57 → 91
    zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
    cl10012
    Location:614 → 753
    DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily

  3. XM_013518921.1 → XP_013374375.1  protein PML isoform X4

    Conserved Domains (4) summary
    smart00336
    Location:128 → 165
    BBOX; B-Box-type zinc finger
    pfam09420
    Location:255 → 313
    Nop16; Ribosome biogenesis protein Nop16
    pfam12126
    Location:239 → 566
    DUF3583; Protein of unknown function (DUF3583)
    pfam13923
    Location:57 → 91
    zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)

  4. XM_013518920.1 → XP_013374374.1  protein PML isoform X3

    Conserved Domains (5) summary
    smart00336
    Location:128 → 165
    BBOX; B-Box-type zinc finger
    COG3266
    Location:472 → 673
    DamX; Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning]
    pfam09420
    Location:255 → 313
    Nop16; Ribosome biogenesis protein Nop16
    pfam12126
    Location:239 → 566
    DUF3583; Protein of unknown function (DUF3583)
    pfam13923
    Location:57 → 91
    zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)

RNA

  1. XR_001235868.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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