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Pdcd6 programmed cell death 6 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102018202, updated on 10-Mar-2024

Summary

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Gene symbol
Pdcd6
Gene description
programmed cell death 6
See related
Ensembl:ENSCLAG00000003275
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955504.1 (75378..94654)

NW_004955504.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 127 Neighboring gene succinate dehydrogenase complex flavoprotein subunit A Neighboring gene aryl-hydrocarbon receptor repressor Neighboring gene exocyst complex component 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955504.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
programmed cell death protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955504.1 Reference ChiLan1.0 Primary Assembly

    Range
    75378..94654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005406991.2 → XP_005407048.1  programmed cell death protein 6 isoform X4

    Conserved Domains (1) summary
    cd00051
    Location:63 → 152
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  2. XM_005406990.2 → XP_005407047.2  programmed cell death protein 6 isoform X3

    Conserved Domains (1) summary
    cl08302
    Location:29 → 118
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  3. XM_005406988.2 → XP_005407045.2  programmed cell death protein 6 isoform X2

    Conserved Domains (3) summary
    cd00051
    Location:96 → 150
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:94 → 151
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:29 → 118
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  4. XM_005406987.2 → XP_005407044.2  programmed cell death protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C2UTL3
    Related
    ENSCLAP00000004601.1, ENSCLAT00000004687.1
    Conserved Domains (3) summary
    cd00051
    Location:96 → 152
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:94 → 153
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:29 → 118
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein
Heading Accession and Version

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