U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Kdm5c lysine demethylase 5C [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102010996, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Kdm5c
Gene description
lysine demethylase 5C
See related
Ensembl:ENSCLAG00000003746
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955475.1 (243666..278064, complement)

NW_004955475.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 173 Neighboring gene TSPY like 2 Neighboring gene IQ motif and Sec7 domain ArfGEF 2 Neighboring gene 40S ribosomal protein SA-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004955475.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
lysine-specific demethylase 5C

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955475.1 Reference ChiLan1.0 Primary Assembly

    Range
    243666..278064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005401483.2 → XP_005401540.1  lysine-specific demethylase 5C isoform X5

    UniProtKB/TrEMBL
    A0A8C2UXU6
    Related
    ENSCLAP00000005274.1, ENSCLAT00000005370.1
    Conserved Domains (7) summary
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    smart01014
    Location:25 → 124
    ARID; ARID/BRIGHT DNA binding domain
    pfam02373
    Location:459 → 575
    JmjC; JmjC domain, hydroxylase
    cd15604
    Location:284 → 329
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    pfam02928
    Location:665 → 717
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:730 → 1056
    PLU-1; PLU-1-like protein
    cl22851
    Location:1145 → 1205
    PHD_SF; PHD finger superfamily

  2. XM_005401482.2 → XP_005401539.1  lysine-specific demethylase 5C isoform X4

    Conserved Domains (7) summary
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    smart01014
    Location:25 → 124
    ARID; ARID/BRIGHT DNA binding domain
    pfam02373
    Location:459 → 575
    JmjC; JmjC domain, hydroxylase
    cd15604
    Location:284 → 329
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    pfam02928
    Location:665 → 717
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:730 → 1056
    PLU-1; PLU-1-like protein
    cl22851
    Location:1145 → 1205
    PHD_SF; PHD finger superfamily

  3. XM_005401478.2 → XP_005401535.1  lysine-specific demethylase 5C isoform X2

    Conserved Domains (7) summary
    smart00501
    Location:80 → 170
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    pfam02373
    Location:499 → 615
    JmjC; JmjC domain, hydroxylase
    cd15604
    Location:324 → 369
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    pfam02928
    Location:705 → 757
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:770 → 1096
    PLU-1; PLU-1-like protein
    cl22851
    Location:1185 → 1245
    PHD_SF; PHD finger superfamily

  4. XM_013502866.1 → XP_013358320.1  lysine-specific demethylase 5C isoform X6

    Conserved Domains (7) summary
    smart00501
    Location:80 → 170
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    pfam02373
    Location:500 → 616
    JmjC; JmjC domain, hydroxylase
    cd15604
    Location:325 → 370
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    pfam02928
    Location:706 → 758
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:771 → 1097
    PLU-1; PLU-1-like protein
    cl22851
    Location:1140 → 1200
    PHD_SF; PHD finger superfamily

  5. XM_013502867.1 → XP_013358321.1  lysine-specific demethylase 5C isoform X7

    Conserved Domains (7) summary
    smart00501
    Location:80 → 170
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    pfam02373
    Location:500 → 616
    JmjC; JmjC domain, hydroxylase
    cd15604
    Location:325 → 370
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    pfam02928
    Location:706 → 758
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:771 → 1097
    PLU-1; PLU-1-like protein
    cl22851
    Location:1186 → 1246
    PHD_SF; PHD finger superfamily

  6. XM_005401479.2 → XP_005401536.1  lysine-specific demethylase 5C isoform X3

    UniProtKB/TrEMBL
    A0A8C2UV60
    Related
    ENSCLAP00000005273.1, ENSCLAT00000005369.1
    Conserved Domains (7) summary
    smart00501
    Location:80 → 170
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    pfam02373
    Location:500 → 616
    JmjC; JmjC domain, hydroxylase
    cd15604
    Location:325 → 370
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    pfam02928
    Location:706 → 758
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:771 → 1097
    PLU-1; PLU-1-like protein
    cl22851
    Location:1186 → 1246
    PHD_SF; PHD finger superfamily

  7. XM_005401477.2 → XP_005401534.1  lysine-specific demethylase 5C isoform X1

    Conserved Domains (7) summary
    smart00501
    Location:80 → 170
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    pfam02373
    Location:500 → 616
    JmjC; JmjC domain, hydroxylase
    cd15604
    Location:325 → 370
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    pfam02928
    Location:706 → 758
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:771 → 1097
    PLU-1; PLU-1-like protein
    cl22851
    Location:1186 → 1246
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.