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Col14a1 collagen type XIV alpha 1 chain [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102009175, updated on 10-Mar-2024

Summary

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Gene symbol
Col14a1
Gene description
collagen type XIV alpha 1 chain
See related
Ensembl:ENSCLAG00000012798
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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See Col14a1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
48
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955417.1 (25579547..25774067)

NW_004955417.1Genomic Context describing neighboring genes Neighboring gene thioredoxin pseudogene Neighboring gene DNA replication and sister chromatid cohesion 1 Neighboring gene DEP domain containing MTOR interacting protein Neighboring gene uncharacterized LOC102008944 Neighboring gene mitochondrial ribosomal protein L13 Neighboring gene MDM2 binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955417.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in interstitial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(XIV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955417.1 Reference ChiLan1.0 Primary Assembly

    Range
    25579547..25774067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013512820.1 → XP_013368274.1  collagen alpha-1(XIV) chain isoform X3

    UniProtKB/TrEMBL
    A0A8C2VPJ7, A0A8C2YRU8
    Related
    ENSCLAP00000018665.1, ENSCLAT00000018848.1
    Conserved Domains (6) summary
    pfam01391
    Location:1484 → 1608
    Collagen; Collagen triple helix repeat (20 copies)
    smart00060
    Location:448 → 517
    FN3; Fibronectin type 3 domain
    smart00210
    Location:1230 → 1425
    TSPN; Thrombospondin N-terminal -like domains
    cd00063
    Location:538 → 622
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:1032 → 1196
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:831 → 909
    fn3; Fibronectin type III domain

  2. XM_013512819.1 → XP_013368273.1  collagen alpha-1(XIV) chain isoform X1

    UniProtKB/TrEMBL
    A0A8C2VPD2, A0A8C2VPJ7
    Related
    ENSCLAP00000018663.1, ENSCLAT00000018846.1
    Conserved Domains (6) summary
    pfam01391
    Location:1484 → 1608
    Collagen; Collagen triple helix repeat (20 copies)
    smart00060
    Location:448 → 517
    FN3; Fibronectin type 3 domain
    smart00210
    Location:1230 → 1425
    TSPN; Thrombospondin N-terminal -like domains
    cd00063
    Location:538 → 622
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:1032 → 1196
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:831 → 909
    fn3; Fibronectin type III domain

  3. XM_005381916.2 → XP_005381973.1  collagen alpha-1(XIV) chain isoform X2

    UniProtKB/TrEMBL
    A0A8C2VPJ7
    Conserved Domains (6) summary
    pfam01391
    Location:1481 → 1605
    Collagen; Collagen triple helix repeat (20 copies)
    smart00060
    Location:448 → 517
    FN3; Fibronectin type 3 domain
    smart00210
    Location:1227 → 1422
    TSPN; Thrombospondin N-terminal -like domains
    cd00063
    Location:538 → 622
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:1029 → 1193
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:828 → 906
    fn3; Fibronectin type III domain
Nucleotide Protein
Heading Accession and Version

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