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Rara retinoic acid receptor alpha [ Microtus ochrogaster (prairie vole) ]

Gene ID: 102000119, updated on 10-Mar-2024

Summary

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Gene symbol
Rara
Gene description
retinoic acid receptor alpha
See related
Ensembl:ENSMOCG00000016096
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus ochrogaster
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current MicOch1.0 (GCF_000317375.1) Unplaced Scaffold NW_004949129.1 (1427424..1475091, complement)

NW_004949129.1Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase II alpha Neighboring gene gap junction protein delta 3 Neighboring gene cell division cycle 6 Neighboring gene WAS/WASL interacting protein family member 2 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004949129 Unplaced Scaffold Reference MicOch1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear glucocorticoid receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to corticotropin-releasing hormone stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microtus ochrogaster Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MicOch1.0

Genomic

  1. NW_004949129.1 Reference MicOch1.0

    Range
    1427424..1475091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026789894.1 → XP_026645695.1  retinoic acid receptor alpha isoform X1

    UniProtKB/TrEMBL
    A0A8J6FZU2
    Conserved Domains (2) summary
    cd06937
    Location:186 → 416
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:82 → 166
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  2. XM_005368257.2 → XP_005368314.1  retinoic acid receptor alpha isoform X1

    UniProtKB/TrEMBL
    A0A8J6FZU2
    Related
    ENSMOCP00000017526.1, ENSMOCT00000021316.1
    Conserved Domains (2) summary
    cd06937
    Location:186 → 416
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:82 → 166
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  3. XM_026789895.1 → XP_026645696.1  retinoic acid receptor alpha isoform X1

    UniProtKB/TrEMBL
    A0A8J6FZU2
    Conserved Domains (2) summary
    cd06937
    Location:186 → 416
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:82 → 166
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  4. XM_005368258.2 → XP_005368315.1  retinoic acid receptor alpha isoform X2

    UniProtKB/TrEMBL
    A0A8J6FZU2
    Related
    ENSMOCP00000017524.1, ENSMOCT00000021314.1
    Conserved Domains (2) summary
    cd06937
    Location:183 → 413
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:79 → 163
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers
Nucleotide Protein
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